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REFERENCE HAIRPIN
*********************************************************************************************
ID                 : mmu-mir-202
DESCRIPTION        : mmu-mir-202 MI0000245 Mus musculus miR-202 stem-loop
CHROMOSOME         : 7
SPAN               : 147143588 - 147143659
LENGTH             : 72
SEQUENCE           : GTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAGATGGAGC
OVERHANG THRESHOLD : 40%
*********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-202-3p
ACCID      : MI0000245
PARENT     : mmu-mir-202
CHROMOSOME : 7
START      : 147143588
STOP       : 147143659
OFFSET     : 45..66
SEQUENCE   : AGAGGTATAGCGCATGGGAAGA
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-202-5p
ACCID      : MI0000245
PARENT     : mmu-mir-202
CHROMOSOME : 7
START      : 147143588
STOP       : 147143659
OFFSET     : 9..29
SEQUENCE   : TTCCTATGCATATACTTCTTT
STRAND     : -
******************************



*** MATURE-5P ***
________________________________________________________________________
GTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAGATGGAGC REF                  7                    147143588 - 147143659 
                                            AGAGGTATAGCGCATGGGAAGA       MATURE-3P            7                    147143633 - 147143725 mmu-miR-202-3p       -                    
        TTCCTATGCATATACTTCTTT                                            MATURE-5P            7                    147143597 - 147143688 mmu-miR-202-5p       -                    
________________________________________________________________________

                                                                    -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
........TTCCTATGCATATACTTCTT.............................................       4823_2_0_0_0_0_0    MATURE-5P            2        40.00            2        50.00            0         0.00                        20   
........TTCCTATGCATATACTTCaTT............................................      35468_2_0_0_0_0_0    MATURE-5P            2        40.00            2        50.00            0         0.00                      18A2   
........TTtCTATGCATATACTTCTTT............................................      13477_0_0_0_0_0_1    MATURE-5P            1        20.00            0         0.00            1       100.00                      2T18   
                                                                                                                ----------                ----------                ----------   
                                                                                                                         5                         4                         1                                          
                                                                                                                                             (80.00)                   (20.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-5P               4               1               5         100.00%
                     ----------      ----------      ----------                
                              4               1               5                



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