[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************
ID : mmu-mir-202
DESCRIPTION : mmu-mir-202 MI0000245 Mus musculus miR-202 stem-loop
CHROMOSOME : 7
SPAN : 147143588 - 147143659
LENGTH : 72
SEQUENCE : GTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAGATGGAGC
OVERHANG THRESHOLD : 40%
*********************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-202-3p
ACCID : MI0000245
PARENT : mmu-mir-202
CHROMOSOME : 7
START : 147143588
STOP : 147143659
OFFSET : 45..66
SEQUENCE : AGAGGTATAGCGCATGGGAAGA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-202-5p
ACCID : MI0000245
PARENT : mmu-mir-202
CHROMOSOME : 7
START : 147143588
STOP : 147143659
OFFSET : 9..29
SEQUENCE : TTCCTATGCATATACTTCTTT
STRAND : -
******************************
*** MATURE-5P ***
________________________________________________________________________
GTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAGATGGAGC REF 7 147143588 - 147143659
AGAGGTATAGCGCATGGGAAGA MATURE-3P 7 147143633 - 147143725 mmu-miR-202-3p -
TTCCTATGCATATACTTCTTT MATURE-5P 7 147143597 - 147143688 mmu-miR-202-5p -
________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........TTCCTATGCATATACTTCTT............................................. 4823_2_0_0_0_0_0 MATURE-5P 2 40.00 2 50.00 0 0.00 20
........TTCCTATGCATATACTTCaTT............................................ 35468_2_0_0_0_0_0 MATURE-5P 2 40.00 2 50.00 0 0.00 18A2
........TTtCTATGCATATACTTCTTT............................................ 13477_0_0_0_0_0_1 MATURE-5P 1 20.00 0 0.00 1 100.00 2T18
---------- ---------- ----------
5 4 1
(80.00) (20.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-5P 4 1 5 100.00%
---------- ---------- ----------
4 1 5
[END]