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REFERENCE HAIRPIN
******************************************************************************************
ID                 : mmu-mir-200c
DESCRIPTION        : mmu-mir-200c MI0000694 Mus musculus miR-200c stem-loop
CHROMOSOME         : 6
SPAN               : 124668340 - 124668408
LENGTH             : 69
SEQUENCE           : CCCTCGTCTTACCCAGCAGTGTTTGGGTGCTGGTTGGGAGTCTCTAATACTGCCGGGTAATGATGGAGG
OVERHANG THRESHOLD : 40%
******************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-200c
ACCID      : MI0000694
PARENT     : mmu-mir-200c
CHROMOSOME : 6
START      : 124668340
STOP       : 124668408
OFFSET     : 45..67
SEQUENCE   : TAATACTGCCGGGTAATGATGGA
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-200c*
ACCID      : MI0000694
PARENT     : mmu-mir-200c
CHROMOSOME : 6
START      : 124668340
STOP       : 124668408
OFFSET     : 5..26
SEQUENCE   : CGTCTTACCCAGCAGTGTTTGG
STRAND     : -
******************************



*** MATURE ***
_____________________________________________________________________
CCCTCGTCTTACCCAGCAGTGTTTGGGTGCTGGTTGGGAGTCTCTAATACTGCCGGGTAATGATGGAGG REF                  6                    124668340 - 124668408 
                                            TAATACTGCCGGGTAATGATGGA   MATURE               6                    124668385 - 124668475 mmu-miR-200c         -                    
    CGTCTTACCCAGCAGTGTTTGG                                            MATURESTAR           6                    124668345 - 124668434 mmu-miR-200c*        -                    
_____________________________________________________________________

                                                                 -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
............................................TAATACTGCCGGGTAATGAT......   39229_1_0_0_0_0_1       MATURE            2        33.33            1        20.00            1       100.00                        20   
............................................TAATACTGCCGGGTAATGATG.....   19808_1_0_0_0_0_0       MATURE            1        16.67            1        20.00            0         0.00                        21   
............................................TAATACTGCCGGGTAcTGATG.....     237_1_0_0_0_0_0       MATURE            1        16.67            1        20.00            0         0.00                      15C5   
............................................TAATACTGCCGGGTAATGATGGt...   11159_1_0_0_0_0_0       MATURE            1        16.67            1        20.00            0         0.00                        22   
............................................TAATACTGCCGGGTAATGATaGA...    7108_1_0_0_0_0_0       MATURE            1        16.67            1        20.00            0         0.00                      20A2   
                                                                                                          ----------                ----------                ----------   
                                                                                                                   6                         5                         1                                          
                                                                                                                                       (83.33)                   (16.67)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               5               1               6         100.00%
                     ----------      ----------      ----------                
                              5               1               6                



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