[BEGIN]
REFERENCE HAIRPIN
******************************************************************************************
ID : mmu-mir-200c
DESCRIPTION : mmu-mir-200c MI0000694 Mus musculus miR-200c stem-loop
CHROMOSOME : 6
SPAN : 124668340 - 124668408
LENGTH : 69
SEQUENCE : CCCTCGTCTTACCCAGCAGTGTTTGGGTGCTGGTTGGGAGTCTCTAATACTGCCGGGTAATGATGGAGG
OVERHANG THRESHOLD : 40%
******************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-200c
ACCID : MI0000694
PARENT : mmu-mir-200c
CHROMOSOME : 6
START : 124668340
STOP : 124668408
OFFSET : 45..67
SEQUENCE : TAATACTGCCGGGTAATGATGGA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-200c*
ACCID : MI0000694
PARENT : mmu-mir-200c
CHROMOSOME : 6
START : 124668340
STOP : 124668408
OFFSET : 5..26
SEQUENCE : CGTCTTACCCAGCAGTGTTTGG
STRAND : -
******************************
*** MATURE ***
_____________________________________________________________________
CCCTCGTCTTACCCAGCAGTGTTTGGGTGCTGGTTGGGAGTCTCTAATACTGCCGGGTAATGATGGAGG REF 6 124668340 - 124668408
TAATACTGCCGGGTAATGATGGA MATURE 6 124668385 - 124668475 mmu-miR-200c -
CGTCTTACCCAGCAGTGTTTGG MATURESTAR 6 124668345 - 124668434 mmu-miR-200c* -
_____________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............................................TAATACTGCCGGGTAATGAT...... 39229_1_0_0_0_0_1 MATURE 2 33.33 1 20.00 1 100.00 20
............................................TAATACTGCCGGGTAATGATG..... 19808_1_0_0_0_0_0 MATURE 1 16.67 1 20.00 0 0.00 21
............................................TAATACTGCCGGGTAcTGATG..... 237_1_0_0_0_0_0 MATURE 1 16.67 1 20.00 0 0.00 15C5
............................................TAATACTGCCGGGTAATGATGGt... 11159_1_0_0_0_0_0 MATURE 1 16.67 1 20.00 0 0.00 22
............................................TAATACTGCCGGGTAATGATaGA... 7108_1_0_0_0_0_0 MATURE 1 16.67 1 20.00 0 0.00 20A2
---------- ---------- ----------
6 5 1
(83.33) (16.67)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 5 1 6 100.00%
---------- ---------- ----------
5 1 6
[END]