[BEGIN]
REFERENCE HAIRPIN
*******************************************************************************************
ID : mmu-mir-200b
DESCRIPTION : mmu-mir-200b MI0000243 Mus musculus miR-200b stem-loop
CHROMOSOME : 4
SPAN : 155429790 - 155429859
LENGTH : 70
SEQUENCE : GCCGTGGCCATCTTACTGGGCAGCATTGGATAGTGTCTGATCTCTAATACTGCCTGGTAATGATGACGGC
OVERHANG THRESHOLD : 40%
*******************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-200b
ACCID : MI0000243
PARENT : mmu-mir-200b
CHROMOSOME : 4
START : 155429790
STOP : 155429859
OFFSET : 45..66
SEQUENCE : TAATACTGCCTGGTAATGATGA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-200b*
ACCID : MI0000243
PARENT : mmu-mir-200b
CHROMOSOME : 4
START : 155429790
STOP : 155429859
OFFSET : 9..30
SEQUENCE : CATCTTACTGGGCAGCATTGGA
STRAND : -
******************************
*** MATURE ***
______________________________________________________________________
GCCGTGGCCATCTTACTGGGCAGCATTGGATAGTGTCTGATCTCTAATACTGCCTGGTAATGATGACGGC REF 4 155429790 - 155429859
TAATACTGCCTGGTAATGATGA MATURE 4 155429835 - 155429925 mmu-miR-200b -
CATCTTACTGGGCAGCATTGGA MATURESTAR 4 155429799 - 155429889 mmu-miR-200b* -
______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............................................TAATACTGCCTGGTAATGATGA..... 43028_34_0_0_0_0_47 MATURE 81 20.45 34 20.00 47 20.80 22
............................................TAATACTGCCTGGTAATGATG...... 41479_22_0_0_0_0_34 MATURE 56 14.14 22 12.94 34 15.04 21
............................................TAATACTGCCTGGTAAcGATGA..... 21824_13_0_0_0_0_22 MATURE 35 8.84 13 7.65 22 9.73 16C5
............................................TAATACTGCCTGGTAATGATGAa.... 35175_13_0_0_0_0_9 MATURE 22 5.56 13 7.65 9 3.98 22
............................................TAATACTGCCTGGTAAaGATGA..... 40076_10_0_0_0_0_8 MATURE 18 4.55 10 5.88 8 3.54 16A5
............................................TAATACTGCCTGGTAAgGATGA..... 41262_5_0_0_0_0_11 MATURE 16 4.04 5 2.94 11 4.87 16G5
............................................TAATACTGCCTGGTAATGATGt..... 29916_4_0_0_0_0_9 MATURE 13 3.28 4 2.35 9 3.98 21
............................................TAATACTGCCTGGTAAcGATGt..... 42615_4_0_0_0_0_6 MATURE 10 2.53 4 2.35 6 2.65 16C4
............................................TAATACTGCCTGGTAATGAT....... 32782_6_0_0_0_0_4 MATURE 10 2.53 6 3.53 4 1.77 20
............................................TAATACTGCCTGGTAATGATGAt.... 21216_3_0_0_0_0_5 MATURE 8 2.02 3 1.76 5 2.21 22
............................................TAATACTGCCTGGTAATaATGA..... 39521_3_0_0_0_0_5 MATURE 8 2.02 3 1.76 5 2.21 17A4
............................................TAATACTGCCTGGTAAgGATGt..... 30519_5_0_0_0_0_2 MATURE 7 1.77 5 2.94 2 0.88 16G4
............................................TAATACTGCCTGGTAcTGATG...... 43784_3_0_0_0_0_3 MATURE 6 1.52 3 1.76 3 1.33 15C5
............................................TAATACTGCCTGGTAATGATGACt... 17283_3_0_0_0_0_3 MATURE 6 1.52 3 1.76 3 1.33 23
............................................TAATACTGCCTGGTAATGcTGACt... 11049_2_0_0_0_0_4 MATURE 6 1.52 2 1.18 4 1.77 18C4
............................................TAATACTGCCTGGTAAcGATG...... 20687_1_0_0_0_0_4 MATURE 5 1.26 1 0.59 4 1.77 16C4
............................................TAATACTGCCTGGTAATaATG...... 43856_0_0_0_0_0_5 MATURE 5 1.26 0 0.00 5 2.21 17A3
............................................TAATACTGCCTGGTAgTGATG...... 35334_2_0_0_0_0_2 MATURE 4 1.01 2 1.18 2 0.88 15G5
............................................TAATACTGCCTGGTAATGATGAC.... 36327_2_0_0_0_0_2 MATURE 4 1.01 2 1.18 2 0.88 23
.............................................AATACTGCCTGGTAATGATG...... 29885_1_0_0_0_0_2 MATURE 3 0.76 1 0.59 2 0.88 20
............................................TAATACTGCCTGGTAATGA........ 39704_0_0_0_0_0_3 MATURE 3 0.76 0 0.00 3 1.33 19
............................................TAATACTGCCTGGTAATGAcGA..... 24818_2_0_0_0_0_1 MATURE 3 0.76 2 1.18 1 0.44 19C2
............................................TAATACTGCCTGGTAATtATGA..... 39936_2_0_0_0_0_1 MATURE 3 0.76 2 1.18 1 0.44 17T4
............................................TAATACTGCCTGGTAAaGATG...... 18891_2_0_0_0_0_1 MATURE 3 0.76 2 1.18 1 0.44 16A4
............................................TAATACTGCCTGGTAAaGATGt..... 41870_1_0_0_0_0_2 MATURE 3 0.76 1 0.59 2 0.88 16A4
............................................TAATACTGCCTGGTAATGAc....... 38022_1_0_0_0_0_1 MATURE 2 0.51 1 0.59 1 0.44 19
............................................TAATACTGCCTGGTAATcATGA..... 18992_1_0_0_0_0_1 MATURE 2 0.51 1 0.59 1 0.44 17C4
............................................TAATACTGCCTGGTAATGtTGACt... 6998_0_0_0_0_0_2 MATURE 2 0.51 0 0.00 2 0.88 18T4
.............................................AATACTGCCTGGTAAcGATGA..... 44159_0_0_0_0_0_2 MATURE 2 0.51 0 0.00 2 0.88 15C5
............................................TAATACTGCCTGGTAATGAaGA..... 26706_2_0_0_0_0_0 MATURE 2 0.51 2 1.18 0 0.00 19A2
............................................TAATACTGCCTGGTAATGATGg..... 34816_2_0_0_0_0_0 MATURE 2 0.51 2 1.18 0 0.00 21
............................................TAATACTGCCTGGTAAaGATGc..... 28767_2_0_0_0_0_0 MATURE 2 0.51 2 1.18 0 0.00 16A4
............................................TAATACTGCCTGGTAATaATGt..... 19269_2_0_0_0_0_0 MATURE 2 0.51 2 1.18 0 0.00 17A3
............................................TAATACTGCCTGGTAATGATc...... 22959_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 20
.............................................AAgACTGCCTGGTAATGATGAg.... 37281_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 2G18
............................................TAATACTGCCTGGTAATGAaGACt... 17594_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 19A3
...........................................CTAATACTGCCTGGTAATGAaGACa... 1558_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 20A3
............................................TAATACTGCCTGGTAtTGATG...... 37318_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 15T5
............................................TAATACTGCCTGGTAATcATGt..... 41830_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 17C3
............................................TAATACTGCCTGGTAATGAcGAa.... 13679_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 19C2
.............................................AATACTGCCTGGTAATGATGAg.... 29753_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 21
............................................TAATACTGCCTGGTAATGtTGAa.... 12146_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 18T3
.............................................AATACTGCCTGGTAATGcTGACt... 5825_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 17C4
.............................................AATACTGCCTGGTAAaGATGA..... 2379_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 15A5
...........................................CTAATACTGCCTGGTAATGATGA..... 1672_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 23
...........................................CTAATACTGCCTGGTAATGAaGAt.... 22002_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 20A2
............................................TAATACTGCCTGGTAAcGATGg..... 22074_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 16C4
.............................................AAaACTGCCTGGTAATGATGAa.... 17975_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 2A18
............................................TAAaACTGCCTGGTAATGATGA..... 2555_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 3A18
............................................TAATACTGCCTGGTAATGATa...... 37675_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 20
...........................................CTAATACTGCCTGGTAAgGATGA..... 13483_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 17G5
............................................TAATACTGCCTGGTAATaATGAC.... 23114_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 17A5
............................................TAATACTGCCTGGTAATGATaACt... 14037_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 20A2
.............................................AATACTGCCTGGTAATGATGACc... 9800_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 22
............................................TAATACTGCCTGGTAATGAg....... 36880_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 19
.............................................AATACTGCCTGGTAATGATGAa.... 39311_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 21
............................................TAATACTGCCTGGTAATGgTG...... 83_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 18G2
.............................................AATACTGCCTGGTAATGATGA..... 38493_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 21
............................................TAAgACTGCCTGGTAATGATGA..... 24976_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 3G18
............................................TAATACTGCCTGGTAATGATaACc... 11347_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 20A2
............................................TAATACTGCCTGGTAATaATGAt.... 23873_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 17A4
.............................................AATACTGCCTGGTAATGAcGAa.... 40488_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 18C2
............................................TAATACTGCCTGaTAATGATGA..... 41321_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 12A9
............................................TAAaACTGCCTGGTAATGATG...... 14755_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 3A17
............................................TAATACTGCCTGGTAATGtTG...... 6868_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 18T2
............................................TAATACTGCCTGGTAATGATGACa... 17494_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 23
............................................TAATACTGCCTGGTAATGAcGACt... 4475_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 19C3
............................................TAATACTGCCTGGTAATGATGAg.... 31346_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 22
............................................TAATACTGCCTGGTAATGAaGAt.... 10602_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 19A2
..............................................ATACTGCCTGGTAATGAcGACt... 4999_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 17C3
............................................TAATACTGCCTGGTAATGgTGACt... 28749_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 18G4
............................................TAAaACTGCCTGGTAATGATGAt.... 7130_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 3A18
............................................TAATACTGCCTGGTAAgGATG...... 2547_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 16G4
...........................................CTAATACTGCCTGGTAAaGATGg..... 31392_1_0_0_0_0_0 MATURE 1 0.25 1 0.59 0 0.00 17A4
............................................TAATACTGCCTGGTAATGATt...... 38609_0_0_0_0_0_1 MATURE 1 0.25 0 0.00 1 0.44 20
---------- ---------- ----------
396 170 226
(42.93) (57.07)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 170 226 396 100.00%
---------- ---------- ----------
170 226 396
[END]