[BEGIN]

REFERENCE HAIRPIN
***************************************************************************************************************
ID                 : mmu-mir-200a
DESCRIPTION        : mmu-mir-200a MI0000554 Mus musculus miR-200a stem-loop
CHROMOSOME         : 4
SPAN               : 155429005 - 155429094
LENGTH             : 90
SEQUENCE           : CTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCAC
OVERHANG THRESHOLD : 40%
***************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-200a
ACCID      : MI0000554
PARENT     : mmu-mir-200a
CHROMOSOME : 4
START      : 155429005
STOP       : 155429094
OFFSET     : 54..75
SEQUENCE   : TAACACTGTCTGGTAACGATGT
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-200a*
ACCID      : MI0000554
PARENT     : mmu-mir-200a
CHROMOSOME : 4
START      : 155429005
STOP       : 155429094
OFFSET     : 16..37
SEQUENCE   : CATCTTACCGGACAGTGCTGGA
STRAND     : -
******************************



*** MATURE ***
__________________________________________________________________________________________
CTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCAC REF                  4                    155429005 - 155429094 
                                                     TAACACTGTCTGGTAACGATGT                MATURE               4                    155429059 - 155429169 mmu-miR-200a         -                    
               CATCTTACCGGACAGTGCTGGA                                                      MATURESTAR           4                    155429021 - 155429131 mmu-miR-200a*        -                    
__________________________________________________________________________________________

                                                                                      -SEQ-                -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....................................................TAACACTGTCTGGTAACGATGT................   44260_59_0_0_0_0_79       MATURE          138        20.47           59        19.60           79        21.18                        22   
.....................................................TAACACTGTCTGGTAACGATGTT...............   35447_48_0_0_0_0_33       MATURE           81        12.02           48        15.95           33         8.85                        23   
.....................................................TAACACTGTCTGGTAACaATGT................   29086_24_0_0_0_0_25       MATURE           49         7.27           24         7.97           25         6.70                      17A4   
......................................................AACACTGTCTGGTAACGATGT................    41413_9_0_0_0_0_28       MATURE           37         5.49            9         2.99           28         7.51                        21   
.....................................................TAACACTGTCTGGTAACGATaTT...............   27648_15_0_0_0_0_16       MATURE           31         4.60           15         4.98           16         4.29                      20A2   
......................................................AACACTGTCTGGTAACGATGTT...............    37864_9_0_0_0_0_20       MATURE           29         4.30            9         2.99           20         5.36                        22   
.....................................................TAACACTGTCTGGTAAtGATGT................   42668_15_0_0_0_0_11       MATURE           26         3.86           15         4.98           11         2.95                      16T5   
.....................................................TAACACTGTCTGGTAACGAaGT................   38172_12_0_0_0_0_11       MATURE           23         3.41           12         3.99           11         2.95                      19A2   
.....................................................TAACACTGTCTGGTAACGATGa................    13237_3_0_0_0_0_16       MATURE           19         2.82            3         1.00           16         4.29                        21   
.....................................................TAACACTGTCTGGTAACGATGTa...............     41629_7_0_0_0_0_7       MATURE           14         2.08            7         2.33            7         1.88                        22   
.....................................................TAACACTGTCTGGTAACGATGc................    36118_11_0_0_0_0_2       MATURE           13         1.93           11         3.65            2         0.54                        21   
.....................................................TAACACTGTCTGGTAAgGATGT................     34301_9_0_0_0_0_4       MATURE           13         1.93            9         2.99            4         1.07                      16G5   
......................................................AACACTGTCTGGTAACaATGT................    41821_2_0_0_0_0_10       MATURE           12         1.78            2         0.66           10         2.68                      16A4   
.....................................................TAACACTGTCTGGTAACGAT..................     32501_5_0_0_0_0_7       MATURE           12         1.78            5         1.66            7         1.88                        20   
.....................................................TAACACTGTCTGGTAACGATGTTt..............       933_7_0_0_0_0_3       MATURE           10         1.48            7         2.33            3         0.80                        23   
......................................................AACACTGTCTGGTAACGATGTa...............     22731_4_0_0_0_0_5       MATURE            9         1.34            4         1.33            5         1.34                        21   
.....................................................TAACACTGTCTGGTAACaATGTT...............     29092_6_0_0_0_0_3       MATURE            9         1.34            6         1.99            3         0.80                      17A5   
.....................................................TAACACTGTCTGGTAACtATGT................     40892_3_0_0_0_0_5       MATURE            8         1.19            3         1.00            5         1.34                      17T4   
.....................................................TAACACTGTCTGGTAACcATGT................      3055_4_0_0_0_0_4       MATURE            8         1.19            4         1.33            4         1.07                      17C4   
......................................................AACACTGTCTGGTAACGATGTTt..............     41122_4_0_0_0_0_3       MATURE            7         1.04            4         1.33            3         0.80                        22   
.....................................................TAACACTGTCTGGTAACGAcGT................     40105_3_0_0_0_0_4       MATURE            7         1.04            3         1.00            4         1.07                      19C2   
......................................................AACACTGTCTGGTAACtATGT................     39737_0_0_0_0_0_5       MATURE            5         0.74            0         0.00            5         1.34                      16T4   
......................................................AACACTGTCTGGTAAtGATGT................     23024_1_0_0_0_0_4       MATURE            5         0.74            1         0.33            4         1.07                      15T5   
.....................................................TAACACTGTCTGGTAAtGATGc................     44268_1_0_0_0_0_4       MATURE            5         0.74            1         0.33            4         1.07                      16T4   
......................................................AACACTGTCTGGTAACGATGc................     31185_0_0_0_0_0_5       MATURE            5         0.74            0         0.00            5         1.34                        20   
.....................................................TAACACTGTCTGGTAACcATGTT...............     41402_1_0_0_0_0_4       MATURE            5         0.74            1         0.33            4         1.07                      17C5   
.....................................................TAACACTGTCTGGTAACGATG.................     36730_2_0_0_0_0_2       MATURE            4         0.59            2         0.66            2         0.54                        21   
.....................................................TAACACTGTCTGGTAACGATGTTa..............     32531_2_0_0_0_0_2       MATURE            4         0.59            2         0.66            2         0.54                        23   
......................................................AACACTGTCTGGTAACGAaGTT...............     30338_3_0_0_0_0_0       MATURE            3         0.45            3         1.00            0         0.00                      18A3   
......................................................AACACTGTCTGGTAACGAaGT................     28752_0_0_0_0_0_3       MATURE            3         0.45            0         0.00            3         0.80                      18A2   
.....................................................TAACACTGTCTGGTAACGAgGTTt..............     21973_1_0_0_0_0_2       MATURE            3         0.45            1         0.33            2         0.54                      19G3   
......................................................AACACTGTCTGGTAAgGATGT................     32946_0_0_0_0_0_2       MATURE            2         0.30            0         0.00            2         0.54                      15G5   
.....................................................TAACACTGTCTGGTAACGATGg................     18470_0_0_0_0_0_2       MATURE            2         0.30            0         0.00            2         0.54                        21   
.....................................................TAACACTGTCTGGTAACGAc..................     34447_1_0_0_0_0_1       MATURE            2         0.30            1         0.33            1         0.27                        19   
.....................................................TAACAtTGTCTGGTAACGATGT................     42409_0_0_0_0_0_2       MATURE            2         0.30            0         0.00            2         0.54                      5T16   
.....................................................TAACACTGTCTGGTAACGATaTTa..............     39800_0_0_0_0_0_2       MATURE            2         0.30            0         0.00            2         0.54                      20A2   
.....................................................TAACACTGTCTGGTAACGAcGTT...............     22593_2_0_0_0_0_0       MATURE            2         0.30            2         0.66            0         0.00                      19C3   
.....................................................TAACACTGTCTGGTAACaATGTa...............     32921_1_0_0_0_0_1       MATURE            2         0.30            1         0.33            1         0.27                      17A4   
......................................................AACACTGTCTGGTAACGAcGT................      7132_0_0_0_0_0_2       MATURE            2         0.30            0         0.00            2         0.54                      18C2   
......................................................AACACTGTCTGGTAACGATGTc...............     36661_1_0_0_0_0_1       MATURE            2         0.30            1         0.33            1         0.27                        21   
.....................................................TAACACTGTCTGGTAACGATGTc...............     35955_0_0_0_0_0_2       MATURE            2         0.30            0         0.00            2         0.54                        22   
......................................................AACACTGTCTGGTAACGAT..................     32049_0_0_0_0_0_2       MATURE            2         0.30            0         0.00            2         0.54                        19   
.....................................................TAACACTGTCTGGTAACGAa..................     36693_2_0_0_0_0_0       MATURE            2         0.30            2         0.66            0         0.00                        19   
......................................................AACACTGTCTGGTAACGATt.................     36675_1_0_0_0_0_1       MATURE            2         0.30            1         0.33            1         0.27                        19   
......................................................AACACTGTCTGGTAACaATGTa...............     43877_1_0_0_0_0_1       MATURE            2         0.30            1         0.33            1         0.27                      16A4   
......................................................AACACTGTCTGGTAACGATtTT...............     41171_0_0_0_0_0_2       MATURE            2         0.30            0         0.00            2         0.54                      19T2   
.....................................................TAACACTGTCTGGTAAgGATGa................      4545_2_0_0_0_0_0       MATURE            2         0.30            2         0.66            0         0.00                      16G4   
......................................................AACACTGTCTGGTAACaATGTT...............     44078_2_0_0_0_0_0       MATURE            2         0.30            2         0.66            0         0.00                      16A5   
......................................................AACACTGTCTGGTAACGATGTTa..............     37457_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                        22   
......................................................AACgCTGTCTGGTAACGATGT................      5891_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      3G17   
.....................................................TAACACTGTCTGGTAACGcTGa................     29902_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      18C2   
.......................................................ACACTGTCTGGTAACGATGc................     27754_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                        19   
......................................................AACACTGTCTGGTAACGATGgTC..............     41827_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      20G2   
........................................................CACTGTCTGGTAACGATGT................     14529_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                        19   
.....................................................TAACACTGTCTGGTAACaATGg................        13_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      17A3   
.....................................................TAACACTGTCTGGTAACGAaGTT...............        63_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      19A3   
......................................................AACACTGTCTGGTgACGATGT................     15987_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      13G7   
........................................................CACTGTCTGGTAACGATGTTa..............     40145_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                        20   
......................................................AACACTGcCTGGTAACGATGTT...............     35926_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      7C14   
....................................................CTAACACTGTCTGGTAACcATGTT...............     22087_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      18C5   
....................................................CTAACACTGTCTGGTAACGATGTa...............     27305_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                        23   
......................................................AACACTGTCTGGTAACcATGTT...............     43312_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      16C5   
.....................................................TAACACTGTCTGGTAACGtTGTTC..............      5539_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      18T5   
.....................................................TAACACTGTCTGGTAACGATGTg...............     36135_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                        22   
.....................................................TAACACTGTCTGGTAACGcTGTTt..............     20594_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      18C4   
.....................................................TAACACTGTCTGGTAACGATcTTa..............     38432_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      20C2   
.....................................................TAACACTGTCTGGTAACGAaGTTt..............     20313_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      19A3   
.....................................................TAACACTGTCTGGTAACGAgGT................     19132_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      19G2   
.....................................................TAACACTGTCTGGTAACcATGTa...............     19882_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      17C4   
.....................................................TAACACTGTCTGGTAACaATGTg...............     38841_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      17A4   
......................................................AACACTGTCTGGTAACGAgGTTa..............     21387_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      18G3   
....................................................CTAACACTGTCTGGTAACaATGTT...............     27286_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      18A5   
....................................................CTAACACTGTCTGGTAACGAaGT................     41665_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      20A2   
......................................................AACACTGTCTGGTAACcATGTa...............      8812_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      16C4   
.....................................................TAACACTGTCTGGTAcCGATG.................      1624_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      15C5   
.....................................................TAACACTGTCTGGTAACGATcTT...............     18884_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      20C2   
.....................................................TAACACTGTCTGGTAACGATcTTt..............      8139_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      20C2   
......................................................AACACTGTCTGGTAACGgTGT................     10422_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      17G3   
......................................................AACACTGTCTGGTAACGATc.................     42018_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                        19   
.....................................................TAACACTGTCTGGTAACtATGTT...............     20108_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      17T5   
......................................................AACACTGTCTGGTAACGATa.................     10806_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                        19   
.....................................................TAACACTGTCTGGTAACGcTGTT...............     29394_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      18C4   
.....................................................TAACACTGTCTGGTAAtGATGa................     30162_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      16T4   
.....................................................TAACACTGTCTGGTAACGATaTTg..............     34906_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      20A2   
...................................................TCaAACACTGTCTGGTAACGATGT................     39298_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      2A21   
.....................................................TAACACTGcCTGGTAACGATGT................     19637_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      8C13   
.....................................................TAACACTGTCTGGTAACGATGcTC..............     43448_0_0_0_0_0_1       MATURE            1         0.15            0         0.00            1         0.27                      21C2   
.....................................................TAACACTGTCTGGTAACGATtTT...............      6893_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      20T2   
.......................................................ACACTGTCTGGTAACGATGTa...............     35974_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                        20   
.....................................................TAACACTGTCTGGTAACaATGa................     30455_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      17A3   
.....................................................TAACACTGTCTGGTAACGAaGTTa..............     14128_1_0_0_0_0_0       MATURE            1         0.15            1         0.33            0         0.00                      19A3   
                                                                                                                                 ----------                ----------                ----------   
                                                                                                                                        674                       301                       373                                          
                                                                                                                                                              (44.66)                   (55.34)                                       




*** MATURESTAR ***
__________________________________________________________________________________________
CTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCAC REF                  4                    155429005 - 155429094 
                                                     TAACACTGTCTGGTAACGATGT                MATURE               4                    155429059 - 155429169 mmu-miR-200a         -                    
               CATCTTACCGGACAGTGCTGGA                                                      MATURESTAR           4                    155429021 - 155429131 mmu-miR-200a*        -                    
__________________________________________________________________________________________

                                                                                      -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..............GCATCTTACCGGACAGTGCTGGAT.....................................................   27796_0_0_0_0_0_1   MATURESTAR            1       100.00            0            0            1       100.00                        24   
                                                                                                                               ----------                ----------                ----------   
                                                                                                                                        1                         0                         1                                          
                                                                                                                                                             (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             301             373             674          99.85%
     MATURESTAR               0               1               1           0.15%
                     ----------      ----------      ----------                
                            301             374             675                



[END]
