[BEGIN]
REFERENCE HAIRPIN
***************************************************************************************************************
ID : mmu-mir-200a
DESCRIPTION : mmu-mir-200a MI0000554 Mus musculus miR-200a stem-loop
CHROMOSOME : 4
SPAN : 155429005 - 155429094
LENGTH : 90
SEQUENCE : CTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCAC
OVERHANG THRESHOLD : 40%
***************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-200a
ACCID : MI0000554
PARENT : mmu-mir-200a
CHROMOSOME : 4
START : 155429005
STOP : 155429094
OFFSET : 54..75
SEQUENCE : TAACACTGTCTGGTAACGATGT
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-200a*
ACCID : MI0000554
PARENT : mmu-mir-200a
CHROMOSOME : 4
START : 155429005
STOP : 155429094
OFFSET : 16..37
SEQUENCE : CATCTTACCGGACAGTGCTGGA
STRAND : -
******************************
*** MATURE ***
__________________________________________________________________________________________
CTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCAC REF 4 155429005 - 155429094
TAACACTGTCTGGTAACGATGT MATURE 4 155429059 - 155429169 mmu-miR-200a -
CATCTTACCGGACAGTGCTGGA MATURESTAR 4 155429021 - 155429131 mmu-miR-200a* -
__________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....................................................TAACACTGTCTGGTAACGATGT................ 44260_59_0_0_0_0_79 MATURE 138 20.47 59 19.60 79 21.18 22
.....................................................TAACACTGTCTGGTAACGATGTT............... 35447_48_0_0_0_0_33 MATURE 81 12.02 48 15.95 33 8.85 23
.....................................................TAACACTGTCTGGTAACaATGT................ 29086_24_0_0_0_0_25 MATURE 49 7.27 24 7.97 25 6.70 17A4
......................................................AACACTGTCTGGTAACGATGT................ 41413_9_0_0_0_0_28 MATURE 37 5.49 9 2.99 28 7.51 21
.....................................................TAACACTGTCTGGTAACGATaTT............... 27648_15_0_0_0_0_16 MATURE 31 4.60 15 4.98 16 4.29 20A2
......................................................AACACTGTCTGGTAACGATGTT............... 37864_9_0_0_0_0_20 MATURE 29 4.30 9 2.99 20 5.36 22
.....................................................TAACACTGTCTGGTAAtGATGT................ 42668_15_0_0_0_0_11 MATURE 26 3.86 15 4.98 11 2.95 16T5
.....................................................TAACACTGTCTGGTAACGAaGT................ 38172_12_0_0_0_0_11 MATURE 23 3.41 12 3.99 11 2.95 19A2
.....................................................TAACACTGTCTGGTAACGATGa................ 13237_3_0_0_0_0_16 MATURE 19 2.82 3 1.00 16 4.29 21
.....................................................TAACACTGTCTGGTAACGATGTa............... 41629_7_0_0_0_0_7 MATURE 14 2.08 7 2.33 7 1.88 22
.....................................................TAACACTGTCTGGTAACGATGc................ 36118_11_0_0_0_0_2 MATURE 13 1.93 11 3.65 2 0.54 21
.....................................................TAACACTGTCTGGTAAgGATGT................ 34301_9_0_0_0_0_4 MATURE 13 1.93 9 2.99 4 1.07 16G5
......................................................AACACTGTCTGGTAACaATGT................ 41821_2_0_0_0_0_10 MATURE 12 1.78 2 0.66 10 2.68 16A4
.....................................................TAACACTGTCTGGTAACGAT.................. 32501_5_0_0_0_0_7 MATURE 12 1.78 5 1.66 7 1.88 20
.....................................................TAACACTGTCTGGTAACGATGTTt.............. 933_7_0_0_0_0_3 MATURE 10 1.48 7 2.33 3 0.80 23
......................................................AACACTGTCTGGTAACGATGTa............... 22731_4_0_0_0_0_5 MATURE 9 1.34 4 1.33 5 1.34 21
.....................................................TAACACTGTCTGGTAACaATGTT............... 29092_6_0_0_0_0_3 MATURE 9 1.34 6 1.99 3 0.80 17A5
.....................................................TAACACTGTCTGGTAACtATGT................ 40892_3_0_0_0_0_5 MATURE 8 1.19 3 1.00 5 1.34 17T4
.....................................................TAACACTGTCTGGTAACcATGT................ 3055_4_0_0_0_0_4 MATURE 8 1.19 4 1.33 4 1.07 17C4
......................................................AACACTGTCTGGTAACGATGTTt.............. 41122_4_0_0_0_0_3 MATURE 7 1.04 4 1.33 3 0.80 22
.....................................................TAACACTGTCTGGTAACGAcGT................ 40105_3_0_0_0_0_4 MATURE 7 1.04 3 1.00 4 1.07 19C2
......................................................AACACTGTCTGGTAACtATGT................ 39737_0_0_0_0_0_5 MATURE 5 0.74 0 0.00 5 1.34 16T4
......................................................AACACTGTCTGGTAAtGATGT................ 23024_1_0_0_0_0_4 MATURE 5 0.74 1 0.33 4 1.07 15T5
.....................................................TAACACTGTCTGGTAAtGATGc................ 44268_1_0_0_0_0_4 MATURE 5 0.74 1 0.33 4 1.07 16T4
......................................................AACACTGTCTGGTAACGATGc................ 31185_0_0_0_0_0_5 MATURE 5 0.74 0 0.00 5 1.34 20
.....................................................TAACACTGTCTGGTAACcATGTT............... 41402_1_0_0_0_0_4 MATURE 5 0.74 1 0.33 4 1.07 17C5
.....................................................TAACACTGTCTGGTAACGATG................. 36730_2_0_0_0_0_2 MATURE 4 0.59 2 0.66 2 0.54 21
.....................................................TAACACTGTCTGGTAACGATGTTa.............. 32531_2_0_0_0_0_2 MATURE 4 0.59 2 0.66 2 0.54 23
......................................................AACACTGTCTGGTAACGAaGTT............... 30338_3_0_0_0_0_0 MATURE 3 0.45 3 1.00 0 0.00 18A3
......................................................AACACTGTCTGGTAACGAaGT................ 28752_0_0_0_0_0_3 MATURE 3 0.45 0 0.00 3 0.80 18A2
.....................................................TAACACTGTCTGGTAACGAgGTTt.............. 21973_1_0_0_0_0_2 MATURE 3 0.45 1 0.33 2 0.54 19G3
......................................................AACACTGTCTGGTAAgGATGT................ 32946_0_0_0_0_0_2 MATURE 2 0.30 0 0.00 2 0.54 15G5
.....................................................TAACACTGTCTGGTAACGATGg................ 18470_0_0_0_0_0_2 MATURE 2 0.30 0 0.00 2 0.54 21
.....................................................TAACACTGTCTGGTAACGAc.................. 34447_1_0_0_0_0_1 MATURE 2 0.30 1 0.33 1 0.27 19
.....................................................TAACAtTGTCTGGTAACGATGT................ 42409_0_0_0_0_0_2 MATURE 2 0.30 0 0.00 2 0.54 5T16
.....................................................TAACACTGTCTGGTAACGATaTTa.............. 39800_0_0_0_0_0_2 MATURE 2 0.30 0 0.00 2 0.54 20A2
.....................................................TAACACTGTCTGGTAACGAcGTT............... 22593_2_0_0_0_0_0 MATURE 2 0.30 2 0.66 0 0.00 19C3
.....................................................TAACACTGTCTGGTAACaATGTa............... 32921_1_0_0_0_0_1 MATURE 2 0.30 1 0.33 1 0.27 17A4
......................................................AACACTGTCTGGTAACGAcGT................ 7132_0_0_0_0_0_2 MATURE 2 0.30 0 0.00 2 0.54 18C2
......................................................AACACTGTCTGGTAACGATGTc............... 36661_1_0_0_0_0_1 MATURE 2 0.30 1 0.33 1 0.27 21
.....................................................TAACACTGTCTGGTAACGATGTc............... 35955_0_0_0_0_0_2 MATURE 2 0.30 0 0.00 2 0.54 22
......................................................AACACTGTCTGGTAACGAT.................. 32049_0_0_0_0_0_2 MATURE 2 0.30 0 0.00 2 0.54 19
.....................................................TAACACTGTCTGGTAACGAa.................. 36693_2_0_0_0_0_0 MATURE 2 0.30 2 0.66 0 0.00 19
......................................................AACACTGTCTGGTAACGATt................. 36675_1_0_0_0_0_1 MATURE 2 0.30 1 0.33 1 0.27 19
......................................................AACACTGTCTGGTAACaATGTa............... 43877_1_0_0_0_0_1 MATURE 2 0.30 1 0.33 1 0.27 16A4
......................................................AACACTGTCTGGTAACGATtTT............... 41171_0_0_0_0_0_2 MATURE 2 0.30 0 0.00 2 0.54 19T2
.....................................................TAACACTGTCTGGTAAgGATGa................ 4545_2_0_0_0_0_0 MATURE 2 0.30 2 0.66 0 0.00 16G4
......................................................AACACTGTCTGGTAACaATGTT............... 44078_2_0_0_0_0_0 MATURE 2 0.30 2 0.66 0 0.00 16A5
......................................................AACACTGTCTGGTAACGATGTTa.............. 37457_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 22
......................................................AACgCTGTCTGGTAACGATGT................ 5891_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 3G17
.....................................................TAACACTGTCTGGTAACGcTGa................ 29902_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 18C2
.......................................................ACACTGTCTGGTAACGATGc................ 27754_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 19
......................................................AACACTGTCTGGTAACGATGgTC.............. 41827_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 20G2
........................................................CACTGTCTGGTAACGATGT................ 14529_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 19
.....................................................TAACACTGTCTGGTAACaATGg................ 13_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 17A3
.....................................................TAACACTGTCTGGTAACGAaGTT............... 63_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 19A3
......................................................AACACTGTCTGGTgACGATGT................ 15987_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 13G7
........................................................CACTGTCTGGTAACGATGTTa.............. 40145_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 20
......................................................AACACTGcCTGGTAACGATGTT............... 35926_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 7C14
....................................................CTAACACTGTCTGGTAACcATGTT............... 22087_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 18C5
....................................................CTAACACTGTCTGGTAACGATGTa............... 27305_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 23
......................................................AACACTGTCTGGTAACcATGTT............... 43312_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 16C5
.....................................................TAACACTGTCTGGTAACGtTGTTC.............. 5539_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 18T5
.....................................................TAACACTGTCTGGTAACGATGTg............... 36135_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 22
.....................................................TAACACTGTCTGGTAACGcTGTTt.............. 20594_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 18C4
.....................................................TAACACTGTCTGGTAACGATcTTa.............. 38432_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 20C2
.....................................................TAACACTGTCTGGTAACGAaGTTt.............. 20313_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 19A3
.....................................................TAACACTGTCTGGTAACGAgGT................ 19132_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 19G2
.....................................................TAACACTGTCTGGTAACcATGTa............... 19882_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 17C4
.....................................................TAACACTGTCTGGTAACaATGTg............... 38841_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 17A4
......................................................AACACTGTCTGGTAACGAgGTTa.............. 21387_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 18G3
....................................................CTAACACTGTCTGGTAACaATGTT............... 27286_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 18A5
....................................................CTAACACTGTCTGGTAACGAaGT................ 41665_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 20A2
......................................................AACACTGTCTGGTAACcATGTa............... 8812_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 16C4
.....................................................TAACACTGTCTGGTAcCGATG................. 1624_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 15C5
.....................................................TAACACTGTCTGGTAACGATcTT............... 18884_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 20C2
.....................................................TAACACTGTCTGGTAACGATcTTt.............. 8139_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 20C2
......................................................AACACTGTCTGGTAACGgTGT................ 10422_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 17G3
......................................................AACACTGTCTGGTAACGATc................. 42018_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 19
.....................................................TAACACTGTCTGGTAACtATGTT............... 20108_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 17T5
......................................................AACACTGTCTGGTAACGATa................. 10806_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 19
.....................................................TAACACTGTCTGGTAACGcTGTT............... 29394_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 18C4
.....................................................TAACACTGTCTGGTAAtGATGa................ 30162_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 16T4
.....................................................TAACACTGTCTGGTAACGATaTTg.............. 34906_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 20A2
...................................................TCaAACACTGTCTGGTAACGATGT................ 39298_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 2A21
.....................................................TAACACTGcCTGGTAACGATGT................ 19637_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 8C13
.....................................................TAACACTGTCTGGTAACGATGcTC.............. 43448_0_0_0_0_0_1 MATURE 1 0.15 0 0.00 1 0.27 21C2
.....................................................TAACACTGTCTGGTAACGATtTT............... 6893_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 20T2
.......................................................ACACTGTCTGGTAACGATGTa............... 35974_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 20
.....................................................TAACACTGTCTGGTAACaATGa................ 30455_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 17A3
.....................................................TAACACTGTCTGGTAACGAaGTTa.............. 14128_1_0_0_0_0_0 MATURE 1 0.15 1 0.33 0 0.00 19A3
---------- ---------- ----------
674 301 373
(44.66) (55.34)
*** MATURESTAR ***
__________________________________________________________________________________________
CTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCAC REF 4 155429005 - 155429094
TAACACTGTCTGGTAACGATGT MATURE 4 155429059 - 155429169 mmu-miR-200a -
CATCTTACCGGACAGTGCTGGA MATURESTAR 4 155429021 - 155429131 mmu-miR-200a* -
__________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............GCATCTTACCGGACAGTGCTGGAT..................................................... 27796_0_0_0_0_0_1 MATURESTAR 1 100.00 0 0 1 100.00 24
---------- ---------- ----------
1 0 1
(0.00) (100.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 301 373 674 99.85%
MATURESTAR 0 1 1 0.15%
---------- ---------- ----------
301 374 675
[END]