[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-19b-2
DESCRIPTION : mmu-mir-19b-2 MI0000546 Mus musculus miR-19b-2 stem-loop
CHROMOSOME : X
SPAN : 50095160 - 50095243
LENGTH : 84
SEQUENCE : ACTTACGATTAGTTTTGCAGATTTGCAGTTCAGCGTATATGTGAATATATGGCTGTGCAAATCCATGCAAAACTGATTGTGGGA
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-19b
ACCID : MI0000546
PARENT : mmu-mir-19b-2
CHROMOSOME : X
START : 50095160
STOP : 50095243
OFFSET : 54..76
SEQUENCE : TGTGCAAATCCATGCAAAACTGA
STRAND : -
******************************
*** MATURE ***
____________________________________________________________________________________
ACTTACGATTAGTTTTGCAGATTTGCAGTTCAGCGTATATGTGAATATATGGCTGTGCAAATCCATGCAAAACTGATTGTGGGA REF X 50095160 - 50095243
TGTGCAAATCCATGCAAAACTGA MATURE X 50095214 - 50095319 mmu-miR-19b -
____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....................................................TGTGCAAATCCATGCAAAcCTGAT........ 37087_16_0_0_0_0_43 MATURE 59 37.82 16 36.36 43 38.39 18C5
.....................................................TGTGCAAATCCATGCAAAACTGAT........ 10071_10_0_0_0_0_38 MATURE 48 30.77 10 22.73 38 33.93 24
.....................................................TGTGCAAATCCATGCAAAgCTGAT........ 4194_6_0_0_0_0_7 MATURE 13 8.33 6 13.64 7 6.25 18G5
.....................................................TGTGCAAATCCATGCAAAtCTGAT........ 30738_3_0_0_0_0_5 MATURE 8 5.13 3 6.82 5 4.46 18T5
.....................................................TGTGCAAATCCATGCAAAACTGATa....... 32671_0_0_0_0_0_6 MATURE 6 3.85 0 0.00 6 5.36 24
.....................................................TGTGCAAATCCATGCAAAACTGATT....... 1478_2_0_0_0_0_3 MATURE 5 3.21 2 4.55 3 2.68 25
.....................................................TGTGtAAATCCATGCAAAACT........... 42035_3_0_0_0_0_2 MATURE 5 3.21 3 6.82 2 1.79 4T16
..................................................GGCTGTGCAAATCCATGCAAAACTG.......... 26785_1_0_0_0_0_3 MATURE 4 2.56 1 2.27 3 2.68 25
......................................................GTGCAAATCCATGCAAAgCTGAT........ 41655_1_0_0_0_0_1 MATURE 2 1.28 1 2.27 1 0.89 17G5
......................................................GTGCAAATCCATGCAAAACTGAT........ 31123_1_0_0_0_0_1 MATURE 2 1.28 1 2.27 1 0.89 23
.....................................................TGTGCAAATCCATGCAAAACTGATc....... 4751_0_0_0_0_0_1 MATURE 1 0.64 0 0.00 1 0.89 24
.......................................................TGCAAATCCATGCAAAcCTGAT........ 25576_0_0_0_0_0_1 MATURE 1 0.64 0 0.00 1 0.89 16C5
.....................................................TGTGCAAATCCATGCAAAACaGATT....... 1434_0_0_0_0_0_1 MATURE 1 0.64 0 0.00 1 0.89 20A4
.....................................................TGTGCAAATCCATGCAAAAtTGAT........ 34055_1_0_0_0_0_0 MATURE 1 0.64 1 2.27 0 0.00 19T4
---------- ---------- ----------
156 44 112
(28.21) (71.79)
*** OTHER ***
____________________________________________________________________________________
ACTTACGATTAGTTTTGCAGATTTGCAGTTCAGCGTATATGTGAATATATGGCTGTGCAAATCCATGCAAAACTGATTGTGGGA REF X 50095160 - 50095243
TGTGCAAATCCATGCAAAACTGA MATURE X 50095214 - 50095319 mmu-miR-19b -
____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........AGTTTTGCAGATTTGCAGTcCAG.................................................... 24813_0_0_0_0_0_1 OTHER 1 25.00 0 0 1 25.00 19C3
..........AGTTTTGCAGATTTGCAGTTCAGC................................................... 43358_0_0_0_0_0_1 OTHER 1 25.00 0 0 1 25.00 24
.......ATgAGTTTTGCAGATTTGCAGTTCA..................................................... 5184_0_0_0_0_0_1 OTHER 1 25.00 0 0 1 25.00 2G22
..........AGTTTTGCAGATTTGCAGTTCAG.................................................... 24934_0_0_0_0_0_1 OTHER 1 25.00 0 0 1 25.00 23
---------- ---------- ----------
4 0 4
(0.00) (100.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 44 112 156 97.50%
OTHER 0 4 4 2.50%
---------- ---------- ----------
44 116 160
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