[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************************************
ID : mmu-mir-199b
DESCRIPTION : mmu-mir-199b MI0000714 Mus musculus miR-199b stem-loop
CHROMOSOME : 2
SPAN : 32173980 - 32174089
LENGTH : 110
SEQUENCE : CCAGAGGATACCTCCACTCCGTCTACCCAGTGTTTAGACTACCTGTTCAGGACTCCCAAATTGTACAGTAGTCTGCACATTGGTTAGGCTGGGCTGGGTTAGACCCTCGG
OVERHANG THRESHOLD : 40%
***********************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-199b
ACCID : MI0000714
PARENT : mmu-mir-199b
CHROMOSOME : 2
START : 32173980
STOP : 32174089
OFFSET : 65..86
SEQUENCE : ACAGTAGTCTGCACATTGGTTA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-199b*
ACCID : MI0000714
PARENT : mmu-mir-199b
CHROMOSOME : 2
START : 32173980
STOP : 32174089
OFFSET : 26..48
SEQUENCE : CCCAGTGTTTAGACTACCTGTTC
STRAND : +
******************************
*** MATURESTAR ***
______________________________________________________________________________________________________________
CCAGAGGATACCTCCACTCCGTCTACCCAGTGTTTAGACTACCTGTTCAGGACTCCCAAATTGTACAGTAGTCTGCACATTGGTTAGGCTGGGCTGGGTTAGACCCTCGG REF 2 32173980 - 32174089
ACAGTAGTCTGCACATTGGTTA MATURE 2 32174045 - 32174175 mmu-miR-199b +
CCCAGTGTTTAGACTACCTGTTC MATURESTAR 2 32174006 - 32174137 mmu-miR-199b* +
______________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................CCAGTGTTTAGACTACCTGT................................................................. 7648_1_0_0_0_0_0 MATURESTAR 1 16.67 1 20.00 0 0.00 20
.........................CCCAGTGTTTAGACTACCaGT................................................................. 39268_1_0_0_0_0_0 MATURESTAR 1 16.67 1 20.00 0 0.00 18A2
........................ACCCAGTGTTTAGACcACCTG.................................................................. 39130_1_0_0_0_0_0 MATURESTAR 1 16.67 1 20.00 0 0.00 15C5
..........................CCAGTGTTTAGACTACCTGTT................................................................ 5805_0_0_0_0_0_1 MATURESTAR 1 16.67 0 0.00 1 100.00 21
.........................CCCAGTGTTTAGACTACCTcTTC............................................................... 35420_1_0_0_0_0_0 MATURESTAR 1 16.67 1 20.00 0 0.00 19C3
.........................CCCAGTGTTTAGACTACCTGTT................................................................ 8336_1_0_0_0_0_0 MATURESTAR 1 16.67 1 20.00 0 0.00 22
---------- ---------- ----------
6 5 1
(83.33) (16.67)
*** OTHER ***
______________________________________________________________________________________________________________
CCAGAGGATACCTCCACTCCGTCTACCCAGTGTTTAGACTACCTGTTCAGGACTCCCAAATTGTACAGTAGTCTGCACATTGGTTAGGCTGGGCTGGGTTAGACCCTCGG REF 2 32173980 - 32174089
ACAGTAGTCTGCACATTGGTTA MATURE 2 32174045 - 32174175 mmu-miR-199b +
CCCAGTGTTTAGACTACCTGTTC MATURESTAR 2 32174006 - 32174137 mmu-miR-199b* +
______________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................................................................................GTTAGGCTGGGCTGGGTTAGACCCc.... 40614_0_0_0_0_0_1 OTHER 1 100.00 0 0 1 100.00 24
---------- ---------- ----------
1 0 1
(0.00) (100.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURESTAR 5 1 6 85.71%
OTHER 0 1 1 14.29%
---------- ---------- ----------
5 2 7
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