[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-1983
DESCRIPTION : mmu-mir-1983 MI0009990 Mus musculus miR-1983 stem-loop
CHROMOSOME : 13
SPAN : 21988787 - 21988918
LENGTH : 132
SEQUENCE : CCTTTACAGAGAAAGCATGCTCCAGTGGCGCAATCGGTTAGCGCGCGGTACTTATACAGCAGTATATGTGCGGGTGATGCCGAGGTTGTGAGTTCGAGCCTCACCTGGAGCATGTTTTCTTCCCTTTCCGCC
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-1983
ACCID : MI0009990
PARENT : mmu-mir-1983
CHROMOSOME : 13
START : 21988787
STOP : 21988918
OFFSET : 100..120
SEQUENCE : CTCACCTGGAGCATGTTTTCT
STRAND : -
******************************
*** OTHER ***
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CCTTTACAGAGAAAGCATGCTCCAGTGGCGCAATCGGTTAGCGCGCGGTACTTATACAGCAGTATATGTGCGGGTGATGCCGAGGTTGTGAGTTCGAGCCTCACCTGGAGCATGTTTTCTTCCCTTTCCGCC REF 13 21988787 - 21988918
CTCACCTGGAGCATGTTTTCT MATURE 13 21988887 - 21989038 mmu-miR-1983 -
____________________________________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................GCTCCAGTGGCGCAATCGGTTAG............................................................................................ 17552_0_0_0_0_0_2 OTHER 2 22.22 0 0.00 2 28.57 23
..................GCTCCAGTGGCGCAATCGaTTAG............................................................................................ 32008_0_0_0_0_0_2 OTHER 2 22.22 0 0.00 2 28.57 18A4
............................CGCAATCGGTTAGCGCGCGGTACTT................................................................................ 7084_1_0_0_0_0_0 OTHER 1 11.11 1 50.00 0 0.00 25
........................GTGGCGCAATCGGTTAGCGCaCGGg.................................................................................... 24155_0_0_0_0_0_1 OTHER 1 11.11 0 0.00 1 14.29 20A3
..................GCTCCAGTGGCGCAATCGGTTc............................................................................................. 8827_0_0_0_0_0_1 OTHER 1 11.11 0 0.00 1 14.29 21
.........................TGGCGCAATCGGTTAGCGCGCGGTA................................................................................... 15847_1_0_0_0_0_0 OTHER 1 11.11 1 50.00 0 0.00 25
.................................TCGGTTAGCGCGCGGTACTT................................................................................ 39007_0_0_0_0_0_1 OTHER 1 11.11 0 0.00 1 14.29 20
---------- ---------- ----------
9 2 7
(22.22) (77.78)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
OTHER 2 7 9 100.00%
---------- ---------- ----------
2 7 9
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