[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************
ID : mmu-mir-1982
DESCRIPTION : mmu-mir-1982 MI0009993 Mus musculus miR-1982 stem-loop
CHROMOSOME : 10
SPAN : 80291542 - 80291615
LENGTH : 74
SEQUENCE : GTTGGTATTGCTTGGGAGGGTCCTGGGGAGGGGAGTTCTGGCACCCCAACCTCTCACCCTATGTTCTCCCACAG
OVERHANG THRESHOLD : 40%
***********************************************************************************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-1982*
ACCID : MI0009993
PARENT : mmu-mir-1982
CHROMOSOME : 10
START : 80291542
STOP : 80291615
OFFSET : 12..31
SEQUENCE : TTGGGAGGGTCCTGGGGAGG
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-1982.1
ACCID : MI0009993
PARENT : mmu-mir-1982
CHROMOSOME : 10
START : 80291542
STOP : 80291615
OFFSET : 52..74
SEQUENCE : TCTCACCCTATGTTCTCCCACAG
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-1982.2
ACCID : MI0009993
PARENT : mmu-mir-1982
CHROMOSOME : 10
START : 80291542
STOP : 80291615
OFFSET : 54..74
SEQUENCE : TCACCCTATGTTCTCCCACAG
STRAND : +
******************************
*** MATURE ***
__________________________________________________________________________
GTTGGTATTGCTTGGGAGGGTCCTGGGGAGGGGAGTTCTGGCACCCCAACCTCTCACCCTATGTTCTCCCACAG REF 10 80291542 - 80291615
TTGGGAGGGTCCTGGGGAGG MATURESTAR 10 80291554 - 80291646 mmu-miR-1982* +
TCTCACCCTATGTTCTCCCACAG MATURE 10 80291594 - 80291689 mmu-miR-1982.1 +
TCACCCTATGTTCTCCCACAG MATURE 10 80291596 - 80291689 mmu-miR-1982.2 +
__________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....................................................TCACCCTATGTTCTCCtACAGt 18570_2_0_0_0_0_0 MATURE 2 28.57 2 66.67 0 0.00 16T4
.....................................................TCACCCTATGTTCTCCCACAGt 7201_0_0_0_0_0_1 MATURE 1 14.29 0 0.00 1 25.00 21
...................................................TCTCACCCTATGTTCTCCCACAc. 9163_1_0_0_0_0_0 MATURE 1 14.29 1 33.33 0 0.00 22
...................................................TCTCACCCTATGTTCTCCCACAGt 8878_0_0_0_0_0_1 MATURE 1 14.29 0 0.00 1 25.00 23
...................................................TCTCACCCTATGTTCTCCtACAt. 13769_0_0_0_0_0_1 MATURE 1 14.29 0 0.00 1 25.00 18T3
...................................................TCTCACCCTATGTTCTCgCACAG. 33664_0_0_0_0_0_1 MATURE 1 14.29 0 0.00 1 25.00 17G5
---------- ---------- ----------
7 3 4
(42.86) (57.14)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 3 4 7 100.00%
---------- ---------- ----------
3 4 7
[END]