[BEGIN]

REFERENCE HAIRPIN
*******************************************************************************************************
ID                 : mmu-mir-1981
DESCRIPTION        : mmu-mir-1981 MI0009992 Mus musculus miR-1981 stem-loop
CHROMOSOME         : 1
SPAN               : 186646286 - 186646367
LENGTH             : 82
SEQUENCE           : GTAAAGGCTGGGCTTAGACGTGGCCTTTGGGTGTGGAATGCACTTCCGTTTGTAACCGCCATCTAACCCTGGCCTTTGACAG
OVERHANG THRESHOLD : 40%
*******************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-1981
ACCID      : MI0009992
PARENT     : mmu-mir-1981
CHROMOSOME : 1
START      : 186646286
STOP       : 186646367
OFFSET     : 1..24
SEQUENCE   : GTAAAGGCTGGGCTTAGACGTGGC
STRAND     : -
******************************



*** MATURE ***
__________________________________________________________________________________
GTAAAGGCTGGGCTTAGACGTGGCCTTTGGGTGTGGAATGCACTTCCGTTTGTAACCGCCATCTAACCCTGGCCTTTGACAG REF                  1                    186646286 - 186646367 
GTAAAGGCTGGGCTTAGACGTGGC                                                           MATURE               1                    186646287 - 186646391 mmu-miR-1981         -                    
__________________________________________________________________________________

                                                                              -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
GTAAAGGCTGGGCTTAGACaTGG............................................................   16270_1_0_0_0_0_3       MATURE            4        13.33            1         5.88            3        23.08                      19A3   
GTAAAGGCTGGGCTTAGACGTGa............................................................   39804_2_0_0_0_0_1       MATURE            3        10.00            2        11.76            1         7.69                        22   
GTAAAGGCTGGGCTTAaACGT..............................................................   21419_3_0_0_0_0_0       MATURE            3        10.00            3        17.65            0         0.00                      16A4   
GTAAAGGCTGGGCTTAGcCGTGt............................................................   37182_1_0_0_0_0_2       MATURE            3        10.00            1         5.88            2        15.38                      17C4   
GTAAAGGCTGGGCTTAGtCGTGa............................................................   17925_0_0_0_0_0_2       MATURE            2         6.67            0         0.00            2        15.38                      17T4   
GTAAAGGCTGGGCTTAGACGc..............................................................   19518_1_0_0_0_0_1       MATURE            2         6.67            1         5.88            1         7.69                        20   
GTAAAGGCTGGGCTTAGACGT..............................................................   40965_2_0_0_0_0_0       MATURE            2         6.67            2        11.76            0         0.00                        21   
GTAAAGGCTGGGCTTAGtCGTGG............................................................   43728_1_0_0_0_0_1       MATURE            2         6.67            1         5.88            1         7.69                      17T5   
GTAAAGGCTGGGCTTAGACGTGG............................................................   18633_1_0_0_0_0_0       MATURE            1         3.33            1         5.88            0         0.00                        23   
GTAAAGGCTGGGCTTAGACGTGt............................................................      48_0_0_0_0_0_1       MATURE            1         3.33            0         0.00            1         7.69                        22   
GTAAAGGCTGGGCTTAGACaTGa............................................................   16660_1_0_0_0_0_0       MATURE            1         3.33            1         5.88            0         0.00                      19A2   
GTAAAGGCTGGGCTTAGcCGTGa............................................................   22453_1_0_0_0_0_0       MATURE            1         3.33            1         5.88            0         0.00                      17C4   
GTAAAGGCTGGGCTTAGACGTG.............................................................   32704_1_0_0_0_0_0       MATURE            1         3.33            1         5.88            0         0.00                        22   
GTAAAGGCTGGGCTTAGACGTGGa...........................................................   16427_1_0_0_0_0_0       MATURE            1         3.33            1         5.88            0         0.00                        23   
GTAAAGGCTGGGCTTAaACGTG.............................................................   42989_0_0_0_0_0_1       MATURE            1         3.33            0         0.00            1         7.69                      16A5   
GTAAAGGCTGGGCTTAGAtGTGG............................................................    3561_1_0_0_0_0_0       MATURE            1         3.33            1         5.88            0         0.00                      18T4   
GTAAAGGCTGGGCTTAGACGaGG............................................................   11352_0_0_0_0_0_1       MATURE            1         3.33            0         0.00            1         7.69                      20A2   
                                                                                                                       ----------                ----------                ----------   
                                                                                                                               30                        17                        13                                          
                                                                                                                                                    (56.67)                   (43.33)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              17              13              30         100.00%
                     ----------      ----------      ----------                
                             17              13              30                



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