[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************************
ID                 : mmu-mir-1964
DESCRIPTION        : mmu-mir-1964 MI0009961 Mus musculus miR-1964 stem-loop
CHROMOSOME         : 7
SPAN               : 30558313 - 30558395
LENGTH             : 83
SEQUENCE           : CTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGA
OVERHANG THRESHOLD : 40%
********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-1964
ACCID      : MI0009961
PARENT     : mmu-mir-1964
CHROMOSOME : 7
START      : 30558313
STOP       : 30558395
OFFSET     : 51..72
SEQUENCE   : CCGACTTCTGGGCTCCGGCTTT
STRAND     : +
******************************



*** MATURE ***
___________________________________________________________________________________
CTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGA REF                  7                    30558313 - 30558395  
                                                  CCGACTTCTGGGCTCCGGCTTT            MATURE               7                    30558364 - 30558467  mmu-miR-1964         +                    
___________________________________________________________________________________

                                                                               -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..................................................CCGACTTCTGGGCTCCGaCTTT............       9556_1_0_0_0_0_0       MATURE            1        16.67            1        25.00            0         0.00                      17A4   
..................................................CCGACTTCTGGGCTCCGGCTTT............      35072_1_0_0_0_0_0       MATURE            1        16.67            1        25.00            0         0.00                        22   
.................................................ACCGACTTCTGGGCTCCGaCTTTt...........      31890_1_0_0_0_0_0       MATURE            1        16.67            1        25.00            0         0.00                      18A4   
..................................................CCGACTTCTGGGCTCCGGCaTTt...........      15011_0_0_0_0_0_1       MATURE            1        16.67            0         0.00            1        50.00                      19A2   
.................................................ACCGACTTCTGGGCTCCGGCTTTa...........      22126_0_0_0_0_0_1       MATURE            1        16.67            0         0.00            1        50.00                        23   
..................................................CCGACTTCTGGGCTCCGGCTTTa...........      16037_1_0_0_0_0_0       MATURE            1        16.67            1        25.00            0         0.00                        22   
                                                                                                                           ----------                ----------                ----------   
                                                                                                                                    6                         4                         2                                          
                                                                                                                                                        (66.67)                   (33.33)                                       




*** OTHER ***
___________________________________________________________________________________
CTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGA REF                  7                    30558313 - 30558395  
                                                  CCGACTTCTGGGCTCCGGCTTT            MATURE               7                    30558364 - 30558467  mmu-miR-1964         +                    
___________________________________________________________________________________

                                                                               -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........AGCTGGAGCACAAAAGCCaGTGt..................................................   43245_2_0_0_0_0_2        OTHER            4        44.44            2        50.00            2        40.00                      18A3   
...........AGCTGGAGCACAAAAGCgGGTGt..................................................    2604_1_0_0_0_0_0        OTHER            1        11.11            1        25.00            0         0.00                      17G4   
...........AGCTGGAGCACAAAAGCCGaTGa..................................................   39241_0_0_0_0_0_1        OTHER            1        11.11            0         0.00            1        20.00                      19A2   
...........AGCTGGAGCACAAAAGCCaGTGa..................................................   19391_0_0_0_0_0_1        OTHER            1        11.11            0         0.00            1        20.00                      18A3   
...........AGCTGGAGCACAAAAGCCGaTGCa.................................................   26856_0_0_0_0_0_1        OTHER            1        11.11            0         0.00            1        20.00                      19A3   
...........AGCTGGAGCACAAAAGCCGcTGt..................................................   19727_1_0_0_0_0_0        OTHER            1        11.11            1        25.00            0         0.00                      19C2   
                                                                                                                        ----------                ----------                ----------   
                                                                                                                                 9                         4                         5                                          
                                                                                                                                                     (44.44)                   (55.56)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               4               2               6          40.00%
          OTHER               4               5               9          60.00%
                     ----------      ----------      ----------                
                              8               7              15                



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