[BEGIN]
REFERENCE HAIRPIN
********************************************************************************************************
ID : mmu-mir-1964
DESCRIPTION : mmu-mir-1964 MI0009961 Mus musculus miR-1964 stem-loop
CHROMOSOME : 7
SPAN : 30558313 - 30558395
LENGTH : 83
SEQUENCE : CTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGA
OVERHANG THRESHOLD : 40%
********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-1964
ACCID : MI0009961
PARENT : mmu-mir-1964
CHROMOSOME : 7
START : 30558313
STOP : 30558395
OFFSET : 51..72
SEQUENCE : CCGACTTCTGGGCTCCGGCTTT
STRAND : +
******************************
*** MATURE ***
___________________________________________________________________________________
CTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGA REF 7 30558313 - 30558395
CCGACTTCTGGGCTCCGGCTTT MATURE 7 30558364 - 30558467 mmu-miR-1964 +
___________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................................................CCGACTTCTGGGCTCCGaCTTT............ 9556_1_0_0_0_0_0 MATURE 1 16.67 1 25.00 0 0.00 17A4
..................................................CCGACTTCTGGGCTCCGGCTTT............ 35072_1_0_0_0_0_0 MATURE 1 16.67 1 25.00 0 0.00 22
.................................................ACCGACTTCTGGGCTCCGaCTTTt........... 31890_1_0_0_0_0_0 MATURE 1 16.67 1 25.00 0 0.00 18A4
..................................................CCGACTTCTGGGCTCCGGCaTTt........... 15011_0_0_0_0_0_1 MATURE 1 16.67 0 0.00 1 50.00 19A2
.................................................ACCGACTTCTGGGCTCCGGCTTTa........... 22126_0_0_0_0_0_1 MATURE 1 16.67 0 0.00 1 50.00 23
..................................................CCGACTTCTGGGCTCCGGCTTTa........... 16037_1_0_0_0_0_0 MATURE 1 16.67 1 25.00 0 0.00 22
---------- ---------- ----------
6 4 2
(66.67) (33.33)
*** OTHER ***
___________________________________________________________________________________
CTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGA REF 7 30558313 - 30558395
CCGACTTCTGGGCTCCGGCTTT MATURE 7 30558364 - 30558467 mmu-miR-1964 +
___________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........AGCTGGAGCACAAAAGCCaGTGt.................................................. 43245_2_0_0_0_0_2 OTHER 4 44.44 2 50.00 2 40.00 18A3
...........AGCTGGAGCACAAAAGCgGGTGt.................................................. 2604_1_0_0_0_0_0 OTHER 1 11.11 1 25.00 0 0.00 17G4
...........AGCTGGAGCACAAAAGCCGaTGa.................................................. 39241_0_0_0_0_0_1 OTHER 1 11.11 0 0.00 1 20.00 19A2
...........AGCTGGAGCACAAAAGCCaGTGa.................................................. 19391_0_0_0_0_0_1 OTHER 1 11.11 0 0.00 1 20.00 18A3
...........AGCTGGAGCACAAAAGCCGaTGCa................................................. 26856_0_0_0_0_0_1 OTHER 1 11.11 0 0.00 1 20.00 19A3
...........AGCTGGAGCACAAAAGCCGcTGt.................................................. 19727_1_0_0_0_0_0 OTHER 1 11.11 1 25.00 0 0.00 19C2
---------- ---------- ----------
9 4 5
(44.44) (55.56)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 4 2 6 40.00%
OTHER 4 5 9 60.00%
---------- ---------- ----------
8 7 15
[END]