[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************************************************************************
ID                 : mmu-mir-1946b
DESCRIPTION        : mmu-mir-1946b MI0009967 Mus musculus miR-1946b stem-loop
CHROMOSOME         : 9
SPAN               : 21417888 - 21418020
LENGTH             : 133
SEQUENCE           : GGGATTAAAGGCGTGCGCCACCACTGCCCAGCTTTCAGAGTGAATTTGAGGCTATCTGGCTATATGAGACTGCTTCACAGGGTAAGAAAAGGGGAAAGTGCCGGGCAGTGGTGGCACATGCTTTTAATCCCAG
OVERHANG THRESHOLD : 40%
**********************************************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-1946b
ACCID      : MI0009967
PARENT     : mmu-mir-1946b
CHROMOSOME : 9
START      : 21417888
STOP       : 21418020
OFFSET     : 100..125
SEQUENCE   : GCCGGGCAGTGGTGGCACATGCTTTT
STRAND     : -
******************************



*** MATURE ***
_____________________________________________________________________________________________________________________________________
GGGATTAAAGGCGTGCGCCACCACTGCCCAGCTTTCAGAGTGAATTTGAGGCTATCTGGCTATATGAGACTGCTTCACAGGGTAAGAAAAGGGGAAAGTGCCGGGCAGTGGTGGCACATGCTTTTAATCCCAG REF                  9                    21417888 - 21418020  
                                                                                                   GCCGGGCAGTGGTGGCACATGCTTTT         MATURE               9                    21417988 - 21418145  mmu-miR-1946b        -                    
_____________________________________________________________________________________________________________________________________

                                                                                                                                 -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........................................................................................................GTGGTGGCACATGCTTTTA........   31250_0_0_0_0_0_2       MATURE            2        40.00            0            0            2        40.00                        19   
.............................................................................................................GGTGGCACATGCTTTTAATCCC...    4945_0_0_0_0_0_1       MATURE            1        20.00            0            0            1        20.00                        22   
......................................................................................................GGGCAGTGGTGGCACATGCTTTTA........   38363_0_0_0_0_0_1       MATURE            1        20.00            0            0            1        20.00                        24   
.......................................................................................................GGCAGTGGTGGCACATGCTTTTA........   13644_0_0_0_0_0_1       MATURE            1        20.00            0            0            1        20.00                        23   
                                                                                                                                                                          ----------                ----------                ----------   
                                                                                                                                                                                   5                         0                         5                                          
                                                                                                                                                                                                        (0.00)                  (100.00)                                       




*** OTHER ***
_____________________________________________________________________________________________________________________________________
GGGATTAAAGGCGTGCGCCACCACTGCCCAGCTTTCAGAGTGAATTTGAGGCTATCTGGCTATATGAGACTGCTTCACAGGGTAAGAAAAGGGGAAAGTGCCGGGCAGTGGTGGCACATGCTTTTAATCCCAG REF                  9                    21417888 - 21418020  
                                                                                                   GCCGGGCAGTGGTGGCACATGCTTTT         MATURE               9                    21417988 - 21418145  mmu-miR-1946b        -                    
_____________________________________________________________________________________________________________________________________

                                                                                                                                 -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
GGGATTAAAGGCGTGCGCCACCAC..............................................................................................................   28220_1_0_0_0_0_6        OTHER            7        24.14            1        33.33            6        23.08                        24   
GGGATTAAAGGCGTGCGCCACC................................................................................................................   35574_0_0_0_0_0_6        OTHER            6        20.69            0         0.00            6        23.08                        22   
.GGATTAAAGGCGTGCGCCACC................................................................................................................   18000_0_0_0_0_0_3        OTHER            3        10.34            0         0.00            3        11.54                        21   
..GATTAAAGGCGTGCGCCACC................................................................................................................   42551_1_0_0_0_0_2        OTHER            3        10.34            1        33.33            2         7.69                        20   
.GGATTAAAGGCGTGCGCCAC.................................................................................................................   37396_0_0_0_0_0_3        OTHER            3        10.34            0         0.00            3        11.54                        20   
GGGATTAAAGGCGTGCGCCACCA...............................................................................................................    9183_0_0_0_0_0_2        OTHER            2         6.90            0         0.00            2         7.69                        23   
GGGATTAAAGGCGTGCGCCAC.................................................................................................................   24921_0_0_0_0_0_2        OTHER            2         6.90            0         0.00            2         7.69                        21   
GGGATTAAAGGCGTGCGCCA..................................................................................................................   10248_0_0_0_0_0_1        OTHER            1         3.45            0         0.00            1         3.85                        20   
GGGATTAAAGGCGTGCGCCACCACT.............................................................................................................   30956_1_0_0_0_0_0        OTHER            1         3.45            1        33.33            0         0.00                        25   
.GGATTAAAGGCGTGCGCCACCAC..............................................................................................................   44227_0_0_0_0_0_1        OTHER            1         3.45            0         0.00            1         3.85                        23   
                                                                                                                                                                          ----------                ----------                ----------   
                                                                                                                                                                                  29                         3                        26                                          
                                                                                                                                                                                                       (10.34)                   (89.66)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               0               5               5          14.71%
          OTHER               3              26              29          85.29%
                     ----------      ----------      ----------                
                              3              31              34                



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