[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-1946b
DESCRIPTION : mmu-mir-1946b MI0009967 Mus musculus miR-1946b stem-loop
CHROMOSOME : 9
SPAN : 21417888 - 21418020
LENGTH : 133
SEQUENCE : GGGATTAAAGGCGTGCGCCACCACTGCCCAGCTTTCAGAGTGAATTTGAGGCTATCTGGCTATATGAGACTGCTTCACAGGGTAAGAAAAGGGGAAAGTGCCGGGCAGTGGTGGCACATGCTTTTAATCCCAG
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-1946b
ACCID : MI0009967
PARENT : mmu-mir-1946b
CHROMOSOME : 9
START : 21417888
STOP : 21418020
OFFSET : 100..125
SEQUENCE : GCCGGGCAGTGGTGGCACATGCTTTT
STRAND : -
******************************
*** MATURE ***
_____________________________________________________________________________________________________________________________________
GGGATTAAAGGCGTGCGCCACCACTGCCCAGCTTTCAGAGTGAATTTGAGGCTATCTGGCTATATGAGACTGCTTCACAGGGTAAGAAAAGGGGAAAGTGCCGGGCAGTGGTGGCACATGCTTTTAATCCCAG REF 9 21417888 - 21418020
GCCGGGCAGTGGTGGCACATGCTTTT MATURE 9 21417988 - 21418145 mmu-miR-1946b -
_____________________________________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........................................................................................................GTGGTGGCACATGCTTTTA........ 31250_0_0_0_0_0_2 MATURE 2 40.00 0 0 2 40.00 19
.............................................................................................................GGTGGCACATGCTTTTAATCCC... 4945_0_0_0_0_0_1 MATURE 1 20.00 0 0 1 20.00 22
......................................................................................................GGGCAGTGGTGGCACATGCTTTTA........ 38363_0_0_0_0_0_1 MATURE 1 20.00 0 0 1 20.00 24
.......................................................................................................GGCAGTGGTGGCACATGCTTTTA........ 13644_0_0_0_0_0_1 MATURE 1 20.00 0 0 1 20.00 23
---------- ---------- ----------
5 0 5
(0.00) (100.00)
*** OTHER ***
_____________________________________________________________________________________________________________________________________
GGGATTAAAGGCGTGCGCCACCACTGCCCAGCTTTCAGAGTGAATTTGAGGCTATCTGGCTATATGAGACTGCTTCACAGGGTAAGAAAAGGGGAAAGTGCCGGGCAGTGGTGGCACATGCTTTTAATCCCAG REF 9 21417888 - 21418020
GCCGGGCAGTGGTGGCACATGCTTTT MATURE 9 21417988 - 21418145 mmu-miR-1946b -
_____________________________________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
GGGATTAAAGGCGTGCGCCACCAC.............................................................................................................. 28220_1_0_0_0_0_6 OTHER 7 24.14 1 33.33 6 23.08 24
GGGATTAAAGGCGTGCGCCACC................................................................................................................ 35574_0_0_0_0_0_6 OTHER 6 20.69 0 0.00 6 23.08 22
.GGATTAAAGGCGTGCGCCACC................................................................................................................ 18000_0_0_0_0_0_3 OTHER 3 10.34 0 0.00 3 11.54 21
..GATTAAAGGCGTGCGCCACC................................................................................................................ 42551_1_0_0_0_0_2 OTHER 3 10.34 1 33.33 2 7.69 20
.GGATTAAAGGCGTGCGCCAC................................................................................................................. 37396_0_0_0_0_0_3 OTHER 3 10.34 0 0.00 3 11.54 20
GGGATTAAAGGCGTGCGCCACCA............................................................................................................... 9183_0_0_0_0_0_2 OTHER 2 6.90 0 0.00 2 7.69 23
GGGATTAAAGGCGTGCGCCAC................................................................................................................. 24921_0_0_0_0_0_2 OTHER 2 6.90 0 0.00 2 7.69 21
GGGATTAAAGGCGTGCGCCA.................................................................................................................. 10248_0_0_0_0_0_1 OTHER 1 3.45 0 0.00 1 3.85 20
GGGATTAAAGGCGTGCGCCACCACT............................................................................................................. 30956_1_0_0_0_0_0 OTHER 1 3.45 1 33.33 0 0.00 25
.GGATTAAAGGCGTGCGCCACCAC.............................................................................................................. 44227_0_0_0_0_0_1 OTHER 1 3.45 0 0.00 1 3.85 23
---------- ---------- ----------
29 3 26
(10.34) (89.66)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 0 5 5 14.71%
OTHER 3 26 29 85.29%
---------- ---------- ----------
3 31 34
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