[BEGIN]

REFERENCE HAIRPIN
***********************************************************************************************
ID                 : mmu-mir-1944
DESCRIPTION        : mmu-mir-1944 MI0009933 Mus musculus miR-1944 stem-loop
CHROMOSOME         : 15
SPAN               : 79913281 - 79913354
LENGTH             : 74
SEQUENCE           : AAGCCACAAATGATGAACCTTTTGACGGGCGGACAGAAACTCTGTGCTGAATGTCAAGTTCTGATTTGGCTTTA
OVERHANG THRESHOLD : 40%
***********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-1944
ACCID      : MI0009933
PARENT     : mmu-mir-1944
CHROMOSOME : 15
START      : 79913281
STOP       : 79913354
OFFSET     : 40..66
SEQUENCE   : CTCTGTGCTGAATGTCAAGTTCTGATT
STRAND     : -
******************************



*** MATURE ***
__________________________________________________________________________
AAGCCACAAATGATGAACCTTTTGACGGGCGGACAGAAACTCTGTGCTGAATGTCAAGTTCTGATTTGGCTTTA REF                  15                   79913281 - 79913354  
                                       CTCTGTGCTGAATGTCAAGTTCTGATT         MATURE               15                   79913321 - 79913420  mmu-miR-1944         -                    
__________________________________________________________________________

                                                                      -SEQ-                -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.........................................CTGTGCTGAATGTCAAGTTCTGATT.........   16534_35_0_0_0_0_31       MATURE           66        31.13           35        33.33           31        28.97                        25   
........................................TCTGTGCTGAATGTCAAGTTCTGAT..........     15530_5_0_0_0_0_7       MATURE           12         5.66            5         4.76            7         6.54                        25   
..........................................TGTGCTGAATGTCAAGTTCTGAaTT........      6851_6_0_0_0_0_5       MATURE           11         5.19            6         5.71            5         4.67                      22A2   
.........................................CTGTGCTGAATGTCAAGTTaTGATT.........     31130_3_0_0_0_0_7       MATURE           10         4.72            3         2.86            7         6.54                      19A5   
.........................................CTGTGCTGAATGTCAAGTTCcGATT.........      7220_7_0_0_0_0_2       MATURE            9         4.25            7         6.67            2         1.87                      20C4   
.........................................CTGTGCTGAATGTCAAGTTtTGATT.........     38702_3_0_0_0_0_6       MATURE            9         4.25            3         2.86            6         5.61                      19T5   
.........................................CTGTGCTGAATGTCAAGTTCTGATc.........     35094_1_0_0_0_0_7       MATURE            8         3.77            1         0.95            7         6.54                        24   
.........................................CTGTGCTGAATGTCAAGTTCaGATT.........     39837_5_0_0_0_0_3       MATURE            8         3.77            5         4.76            3         2.80                      20A4   
.........................................CTGTGCTGAATGTCAAGTTCTaATT.........     43386_4_0_0_0_0_3       MATURE            7         3.30            4         3.81            3         2.80                      21A3   
......................................ACTCTGTGCTGAATGTCAAGTaCTG............      3359_3_0_0_0_0_4       MATURE            7         3.30            3         2.86            4         3.74                      21A3   
........................................TCTGTGCTGAATGTCAAGTgCTGAT..........     30392_1_0_0_0_0_4       MATURE            5         2.36            1         0.95            4         3.74                      19G5   
........................................TCTGTGCTGAATGTCAAGTcCTGAT..........     38419_2_0_0_0_0_2       MATURE            4         1.89            2         1.90            2         1.87                      19C5   
........................................TCTGTGCTGAATGTCAAGTTCTaAT..........     26955_3_0_0_0_0_1       MATURE            4         1.89            3         2.86            1         0.93                      22A2   
..........................................TGTGCTGAATGTCAAGTTCTGAcTT........     13367_3_0_0_0_0_1       MATURE            4         1.89            3         2.86            1         0.93                      22C2   
.........................................CTGTGCTGAATGTCAAGTTCTGATa.........       951_3_0_0_0_0_0       MATURE            3         1.42            3         2.86            0         0.00                        24   
.........................................CTGTGCTGAATGTCAAGTTgTGATT.........     41316_2_0_0_0_0_1       MATURE            3         1.42            2         1.90            1         0.93                      19G5   
........................................TCTGTGCTGAATGTCAAGTTCcGAT..........     28897_1_0_0_0_0_1       MATURE            2         0.94            1         0.95            1         0.93                      21C3   
.........................................CTGTGCTGAATGTCAAGTTCTcATa.........     14431_0_0_0_0_0_2       MATURE            2         0.94            0         0.00            2         1.87                      21C2   
..........................................TGTGCTGAATGTCAAGTTCTGATTT........      6919_1_0_0_0_0_1       MATURE            2         0.94            1         0.95            1         0.93                        25   
........................................TCTGTGCTGAATGTCAAGTTCTGAa..........     15352_0_0_0_0_0_2       MATURE            2         0.94            0         0.00            2         1.87                        24   
.......................................CTCTGTGCTGAATGTCAAGTaCTG............     16266_1_0_0_0_0_1       MATURE            2         0.94            1         0.95            1         0.93                      20A3   
.........................................CTGTGCTGAATGTCAAGTTCTcATT.........      3984_2_0_0_0_0_0       MATURE            2         0.94            2         1.90            0         0.00                      21C3   
........................................TCTGTGCTGAATGTCAAGTgCTGAa..........     34126_0_0_0_0_0_2       MATURE            2         0.94            0         0.00            2         1.87                      19G4   
..........................................TGTGCTGAATGTCAAGTTCTGATTa........     38782_1_0_0_0_0_1       MATURE            2         0.94            1         0.95            1         0.93                        24   
........................................TCTGTGCTGAATGTCAAGTTCaGAT..........     39778_0_0_0_0_0_1       MATURE            1         0.47            0         0.00            1         0.93                      21A3   
........................................TCTGTGCTGAATGTCAAGTTtTGAa..........     11114_0_0_0_0_0_1       MATURE            1         0.47            0         0.00            1         0.93                      20T3   
..........................................TGTGCTGAATGTCAAGTTCcGATTT........      1602_1_0_0_0_0_0       MATURE            1         0.47            1         0.95            0         0.00                      19C5   
.......................................CTCTGTGCTGAATGTCAAGTaCTGA...........     16113_1_0_0_0_0_0       MATURE            1         0.47            1         0.95            0         0.00                      20A4   
.........................................CTGTGCTGAATGTCAAGTTtTGATa.........     30650_1_0_0_0_0_0       MATURE            1         0.47            1         0.95            0         0.00                      19T4   
.........................................CTGTGCTGAATGTCAAGTTCTaAT..........     10069_0_0_0_0_0_1       MATURE            1         0.47            0         0.00            1         0.93                      21A2   
..........................................TGTGCTGAATGTCAAGTTCTGcTTc........      5296_1_0_0_0_0_0       MATURE            1         0.47            1         0.95            0         0.00                      21C2   
........................................TCTGTGCTGAATGTCAAGTaCTGAT..........     24038_0_0_0_0_0_1       MATURE            1         0.47            0         0.00            1         0.93                      19A5   
..........................................TGTGCTGAATGTCAAGTTCcGATTg........      1845_0_0_0_0_0_1       MATURE            1         0.47            0         0.00            1         0.93                      19C4   
..........................................TGTGCTGAATGTCAAGTTCTGATT.........     31275_0_0_0_0_0_1       MATURE            1         0.47            0         0.00            1         0.93                        24   
..........................................TGTGCTGAATGTCAAGTTCTGcTTT........     34599_0_0_0_0_0_1       MATURE            1         0.47            0         0.00            1         0.93                      21C3   
.........................................CTGcGCTGAATGTCAAGTTCTGATT.........     16125_1_0_0_0_0_0       MATURE            1         0.47            1         0.95            0         0.00                      3C21   
..........................................TGTGCTGAATGTCAAGTTCTGATTc........      8435_1_0_0_0_0_0       MATURE            1         0.47            1         0.95            0         0.00                        24   
..........................................TGTGCTGAATGTCAAGTTCTGAgTT........       985_0_0_0_0_0_1       MATURE            1         0.47            0         0.00            1         0.93                      22G2   
......................................ACTCTGTGCTGAATGTCAAGaTCTG............     23410_1_0_0_0_0_0       MATURE            1         0.47            1         0.95            0         0.00                      20A4   
..........................................TGTGCTGAATGTCAAGTTCaGATTa........     36513_1_0_0_0_0_0       MATURE            1         0.47            1         0.95            0         0.00                      19A4   
..........................................TGTGCTGAATGTCAAGTTCTcATTT........     12314_0_0_0_0_0_1       MATURE            1         0.47            0         0.00            1         0.93                      20C4   
.......................................CTCTGTGCTGAATGTCAAGTcCTGt...........     19926_1_0_0_0_0_0       MATURE            1         0.47            1         0.95            0         0.00                      20C3   
.......................................CTCTGTGCTGAATGTCAAGTcCTGg...........     21488_0_0_0_0_0_1       MATURE            1         0.47            0         0.00            1         0.93                      20C3   
.........................................CTGTGCTGAATGTCAAGTTCTGcTT.........      8735_1_0_0_0_0_0       MATURE            1         0.47            1         0.95            0         0.00                      22C2   
........................................TCTGTGCTGAATGTCAAGTTaTGAT..........     36813_0_0_0_0_0_1       MATURE            1         0.47            0         0.00            1         0.93                      20A4   
..........................................TGTGCTGAATGTCAAGTTCcGATTa........     17452_1_0_0_0_0_0       MATURE            1         0.47            1         0.95            0         0.00                      19C4   
.......................................CTCTGTGCTGAATGTCAAGTTCTGA...........     38843_1_0_0_0_0_0       MATURE            1         0.47            1         0.95            0         0.00                        25   
......................................ACTCTGTGCTGAATGTCAAGTgCT.............     12720_1_0_0_0_0_0       MATURE            1         0.47            1         0.95            0         0.00                      21G2   
.......................................CTCTGTGCTGAATGTCAAGTTCTGt...........     20499_0_0_0_0_0_1       MATURE            1         0.47            0         0.00            1         0.93                        24   
......................................ACTCTGTGCTGAATGTCAAGTTt..............     30014_0_0_0_0_0_1       MATURE            1         0.47            0         0.00            1         0.93                        22   
                                                                                                                 ----------                ----------                ----------   
                                                                                                                        212                       105                       107                                          
                                                                                                                                              (49.53)                   (50.47)                                       




*** OTHER ***
__________________________________________________________________________
AAGCCACAAATGATGAACCTTTTGACGGGCGGACAGAAACTCTGTGCTGAATGTCAAGTTCTGATTTGGCTTTA REF                  15                   79913281 - 79913354  
                                       CTCTGTGCTGAATGTCAAGTTCTGATT         MATURE               15                   79913321 - 79913420  mmu-miR-1944         -                    
__________________________________________________________________________

                                                                      -SEQ-               -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..GCgACAAATGATGAACCTTTT....................................................   31013_2_0_0_0_0_71        OTHER           73        57.48            2         9.52           71        66.98                      2G18   
..GCgACAAATGATGAACCTTTTG...................................................    20372_3_0_0_0_0_5        OTHER            8         6.30            3        14.29            5         4.72                      2G19   
.....ACAAATGATGAACCTTTTGACGaGC.............................................    40086_0_0_0_0_0_5        OTHER            5         3.94            0         0.00            5         4.72                      22A2   
....CACAAATGATGAACCTTTTGACG................................................    42186_1_0_0_0_0_2        OTHER            3         2.36            1         4.76            2         1.89                        23   
.....ACAAATGATGAACCTTTTGACGG...............................................    39634_2_0_0_0_0_1        OTHER            3         2.36            2         9.52            1         0.94                        23   
....CACAAATGATGAACCTTaTGACG................................................    42771_1_0_0_0_0_2        OTHER            3         2.36            1         4.76            2         1.89                      17A5   
.....ACAAATGATGAACCTTTTGACGtGC.............................................    32010_0_0_0_0_0_2        OTHER            2         1.57            0         0.00            2         1.89                      22T2   
.....ACAAATGATGAACCTTTgGACGG...............................................    33769_2_0_0_0_0_0        OTHER            2         1.57            2         9.52            0         0.00                      17G5   
..............................GGACAGAAACTCTGTGCTGAATGTa....................    10530_0_0_0_0_0_2        OTHER            2         1.57            0         0.00            2         1.89                        24   
.....ACAAATGATGAACCTTTTGACG................................................    11737_1_0_0_0_0_1        OTHER            2         1.57            1         4.76            1         0.94                        22   
.....ACAAATGATGAACCTTTTGAaGGc..............................................    35692_0_0_0_0_0_2        OTHER            2         1.57            0         0.00            2         1.89                      20A2   
.....ACAAATGATGAACCTTTTcACG................................................    34428_1_0_0_0_0_0        OTHER            1         0.79            1         4.76            0         0.00                      18C3   
....CACAAATGATGAACCTTTTGACGt...............................................    23462_0_0_0_0_0_1        OTHER            1         0.79            0         0.00            1         0.94                        23   
.....ACAAATGATGAACCTTTTGACGGa..............................................     5810_0_0_0_0_0_1        OTHER            1         0.79            0         0.00            1         0.94                        23   
......CAAATGATGAACCTTaTGACG................................................    12567_1_0_0_0_0_0        OTHER            1         0.79            1         4.76            0         0.00                      15A5   
.....ACAAATGATGAACCTTTTGACaGGC.............................................     6514_0_0_0_0_0_1        OTHER            1         0.79            0         0.00            1         0.94                      21A3   
....CACAAATGATGAACCTTTTGAC.................................................    37976_1_0_0_0_0_0        OTHER            1         0.79            1         4.76            0         0.00                        22   
....CACAAATGATGAACCTTTTGACGG...............................................    43274_1_0_0_0_0_0        OTHER            1         0.79            1         4.76            0         0.00                        24   
.....ACAAATGATGAACCTTTTGAaGGGC.............................................    43959_0_0_0_0_0_1        OTHER            1         0.79            0         0.00            1         0.94                      20A4   
.....ACAAATGATGAACCTTTTGACc................................................    16767_0_0_0_0_0_1        OTHER            1         0.79            0         0.00            1         0.94                        21   
....CACAAATGATGAACCTTTaGACGG...............................................    31297_0_0_0_0_0_1        OTHER            1         0.79            0         0.00            1         0.94                      18A5   
.....ACAAATGATGAACCTTTTcACGa...............................................    10158_0_0_0_0_0_1        OTHER            1         0.79            0         0.00            1         0.94                      18C3   
.....ACAAATGATGAACCTTTTGACGa...............................................    35128_1_0_0_0_0_0        OTHER            1         0.79            1         4.76            0         0.00                        22   
..GCgACAAATGATGAACCTTTTa...................................................     6027_1_0_0_0_0_0        OTHER            1         0.79            1         4.76            0         0.00                      2G18   
.....ACAAATGATGAACCTTTTGACaGGa.............................................     9189_0_0_0_0_0_1        OTHER            1         0.79            0         0.00            1         0.94                      21A2   
.....ACAAATGATGAACCTTTTGAa.................................................    17015_1_0_0_0_0_0        OTHER            1         0.79            1         4.76            0         0.00                        20   
....CACAAATGATGAACCTTTcGACGa...............................................      663_1_0_0_0_0_0        OTHER            1         0.79            1         4.76            0         0.00                      18C4   
....CACAAATGATGAACCTTaTGACa................................................    31247_1_0_0_0_0_0        OTHER            1         0.79            1         4.76            0         0.00                      17A4   
.............................CGGACAGAAACTCTGTGCTGAATGT.....................     9507_0_0_0_0_0_1        OTHER            1         0.79            0         0.00            1         0.94                        25   
.....ACAAATGATGAACCTTTTGACGGGC.............................................     7343_0_0_0_0_0_1        OTHER            1         0.79            0         0.00            1         0.94                        25   
..GCgACAAATGATGAACCTTTTGACG................................................    41828_0_0_0_0_0_1        OTHER            1         0.79            0         0.00            1         0.94                      2G22   
......CAAATGATGAACCTTTTGACGaGC.............................................    11492_0_0_0_0_0_1        OTHER            1         0.79            0         0.00            1         0.94                      21A2   
.....ACAAATGATGAACCTTTTGAC.................................................    25844_0_0_0_0_0_1        OTHER            1         0.79            0         0.00            1         0.94                        21   
                                                                                                                ----------                ----------                ----------   
                                                                                                                       127                        21                       106                                          
                                                                                                                                             (16.54)                   (83.46)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             105             107             212          62.54%
          OTHER              21             106             127          37.46%
                     ----------      ----------      ----------                
                            126             213             339                



[END]
