[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************
ID : mmu-mir-1944
DESCRIPTION : mmu-mir-1944 MI0009933 Mus musculus miR-1944 stem-loop
CHROMOSOME : 15
SPAN : 79913281 - 79913354
LENGTH : 74
SEQUENCE : AAGCCACAAATGATGAACCTTTTGACGGGCGGACAGAAACTCTGTGCTGAATGTCAAGTTCTGATTTGGCTTTA
OVERHANG THRESHOLD : 40%
***********************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-1944
ACCID : MI0009933
PARENT : mmu-mir-1944
CHROMOSOME : 15
START : 79913281
STOP : 79913354
OFFSET : 40..66
SEQUENCE : CTCTGTGCTGAATGTCAAGTTCTGATT
STRAND : -
******************************
*** MATURE ***
__________________________________________________________________________
AAGCCACAAATGATGAACCTTTTGACGGGCGGACAGAAACTCTGTGCTGAATGTCAAGTTCTGATTTGGCTTTA REF 15 79913281 - 79913354
CTCTGTGCTGAATGTCAAGTTCTGATT MATURE 15 79913321 - 79913420 mmu-miR-1944 -
__________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.........................................CTGTGCTGAATGTCAAGTTCTGATT......... 16534_35_0_0_0_0_31 MATURE 66 31.13 35 33.33 31 28.97 25
........................................TCTGTGCTGAATGTCAAGTTCTGAT.......... 15530_5_0_0_0_0_7 MATURE 12 5.66 5 4.76 7 6.54 25
..........................................TGTGCTGAATGTCAAGTTCTGAaTT........ 6851_6_0_0_0_0_5 MATURE 11 5.19 6 5.71 5 4.67 22A2
.........................................CTGTGCTGAATGTCAAGTTaTGATT......... 31130_3_0_0_0_0_7 MATURE 10 4.72 3 2.86 7 6.54 19A5
.........................................CTGTGCTGAATGTCAAGTTCcGATT......... 7220_7_0_0_0_0_2 MATURE 9 4.25 7 6.67 2 1.87 20C4
.........................................CTGTGCTGAATGTCAAGTTtTGATT......... 38702_3_0_0_0_0_6 MATURE 9 4.25 3 2.86 6 5.61 19T5
.........................................CTGTGCTGAATGTCAAGTTCTGATc......... 35094_1_0_0_0_0_7 MATURE 8 3.77 1 0.95 7 6.54 24
.........................................CTGTGCTGAATGTCAAGTTCaGATT......... 39837_5_0_0_0_0_3 MATURE 8 3.77 5 4.76 3 2.80 20A4
.........................................CTGTGCTGAATGTCAAGTTCTaATT......... 43386_4_0_0_0_0_3 MATURE 7 3.30 4 3.81 3 2.80 21A3
......................................ACTCTGTGCTGAATGTCAAGTaCTG............ 3359_3_0_0_0_0_4 MATURE 7 3.30 3 2.86 4 3.74 21A3
........................................TCTGTGCTGAATGTCAAGTgCTGAT.......... 30392_1_0_0_0_0_4 MATURE 5 2.36 1 0.95 4 3.74 19G5
........................................TCTGTGCTGAATGTCAAGTcCTGAT.......... 38419_2_0_0_0_0_2 MATURE 4 1.89 2 1.90 2 1.87 19C5
........................................TCTGTGCTGAATGTCAAGTTCTaAT.......... 26955_3_0_0_0_0_1 MATURE 4 1.89 3 2.86 1 0.93 22A2
..........................................TGTGCTGAATGTCAAGTTCTGAcTT........ 13367_3_0_0_0_0_1 MATURE 4 1.89 3 2.86 1 0.93 22C2
.........................................CTGTGCTGAATGTCAAGTTCTGATa......... 951_3_0_0_0_0_0 MATURE 3 1.42 3 2.86 0 0.00 24
.........................................CTGTGCTGAATGTCAAGTTgTGATT......... 41316_2_0_0_0_0_1 MATURE 3 1.42 2 1.90 1 0.93 19G5
........................................TCTGTGCTGAATGTCAAGTTCcGAT.......... 28897_1_0_0_0_0_1 MATURE 2 0.94 1 0.95 1 0.93 21C3
.........................................CTGTGCTGAATGTCAAGTTCTcATa......... 14431_0_0_0_0_0_2 MATURE 2 0.94 0 0.00 2 1.87 21C2
..........................................TGTGCTGAATGTCAAGTTCTGATTT........ 6919_1_0_0_0_0_1 MATURE 2 0.94 1 0.95 1 0.93 25
........................................TCTGTGCTGAATGTCAAGTTCTGAa.......... 15352_0_0_0_0_0_2 MATURE 2 0.94 0 0.00 2 1.87 24
.......................................CTCTGTGCTGAATGTCAAGTaCTG............ 16266_1_0_0_0_0_1 MATURE 2 0.94 1 0.95 1 0.93 20A3
.........................................CTGTGCTGAATGTCAAGTTCTcATT......... 3984_2_0_0_0_0_0 MATURE 2 0.94 2 1.90 0 0.00 21C3
........................................TCTGTGCTGAATGTCAAGTgCTGAa.......... 34126_0_0_0_0_0_2 MATURE 2 0.94 0 0.00 2 1.87 19G4
..........................................TGTGCTGAATGTCAAGTTCTGATTa........ 38782_1_0_0_0_0_1 MATURE 2 0.94 1 0.95 1 0.93 24
........................................TCTGTGCTGAATGTCAAGTTCaGAT.......... 39778_0_0_0_0_0_1 MATURE 1 0.47 0 0.00 1 0.93 21A3
........................................TCTGTGCTGAATGTCAAGTTtTGAa.......... 11114_0_0_0_0_0_1 MATURE 1 0.47 0 0.00 1 0.93 20T3
..........................................TGTGCTGAATGTCAAGTTCcGATTT........ 1602_1_0_0_0_0_0 MATURE 1 0.47 1 0.95 0 0.00 19C5
.......................................CTCTGTGCTGAATGTCAAGTaCTGA........... 16113_1_0_0_0_0_0 MATURE 1 0.47 1 0.95 0 0.00 20A4
.........................................CTGTGCTGAATGTCAAGTTtTGATa......... 30650_1_0_0_0_0_0 MATURE 1 0.47 1 0.95 0 0.00 19T4
.........................................CTGTGCTGAATGTCAAGTTCTaAT.......... 10069_0_0_0_0_0_1 MATURE 1 0.47 0 0.00 1 0.93 21A2
..........................................TGTGCTGAATGTCAAGTTCTGcTTc........ 5296_1_0_0_0_0_0 MATURE 1 0.47 1 0.95 0 0.00 21C2
........................................TCTGTGCTGAATGTCAAGTaCTGAT.......... 24038_0_0_0_0_0_1 MATURE 1 0.47 0 0.00 1 0.93 19A5
..........................................TGTGCTGAATGTCAAGTTCcGATTg........ 1845_0_0_0_0_0_1 MATURE 1 0.47 0 0.00 1 0.93 19C4
..........................................TGTGCTGAATGTCAAGTTCTGATT......... 31275_0_0_0_0_0_1 MATURE 1 0.47 0 0.00 1 0.93 24
..........................................TGTGCTGAATGTCAAGTTCTGcTTT........ 34599_0_0_0_0_0_1 MATURE 1 0.47 0 0.00 1 0.93 21C3
.........................................CTGcGCTGAATGTCAAGTTCTGATT......... 16125_1_0_0_0_0_0 MATURE 1 0.47 1 0.95 0 0.00 3C21
..........................................TGTGCTGAATGTCAAGTTCTGATTc........ 8435_1_0_0_0_0_0 MATURE 1 0.47 1 0.95 0 0.00 24
..........................................TGTGCTGAATGTCAAGTTCTGAgTT........ 985_0_0_0_0_0_1 MATURE 1 0.47 0 0.00 1 0.93 22G2
......................................ACTCTGTGCTGAATGTCAAGaTCTG............ 23410_1_0_0_0_0_0 MATURE 1 0.47 1 0.95 0 0.00 20A4
..........................................TGTGCTGAATGTCAAGTTCaGATTa........ 36513_1_0_0_0_0_0 MATURE 1 0.47 1 0.95 0 0.00 19A4
..........................................TGTGCTGAATGTCAAGTTCTcATTT........ 12314_0_0_0_0_0_1 MATURE 1 0.47 0 0.00 1 0.93 20C4
.......................................CTCTGTGCTGAATGTCAAGTcCTGt........... 19926_1_0_0_0_0_0 MATURE 1 0.47 1 0.95 0 0.00 20C3
.......................................CTCTGTGCTGAATGTCAAGTcCTGg........... 21488_0_0_0_0_0_1 MATURE 1 0.47 0 0.00 1 0.93 20C3
.........................................CTGTGCTGAATGTCAAGTTCTGcTT......... 8735_1_0_0_0_0_0 MATURE 1 0.47 1 0.95 0 0.00 22C2
........................................TCTGTGCTGAATGTCAAGTTaTGAT.......... 36813_0_0_0_0_0_1 MATURE 1 0.47 0 0.00 1 0.93 20A4
..........................................TGTGCTGAATGTCAAGTTCcGATTa........ 17452_1_0_0_0_0_0 MATURE 1 0.47 1 0.95 0 0.00 19C4
.......................................CTCTGTGCTGAATGTCAAGTTCTGA........... 38843_1_0_0_0_0_0 MATURE 1 0.47 1 0.95 0 0.00 25
......................................ACTCTGTGCTGAATGTCAAGTgCT............. 12720_1_0_0_0_0_0 MATURE 1 0.47 1 0.95 0 0.00 21G2
.......................................CTCTGTGCTGAATGTCAAGTTCTGt........... 20499_0_0_0_0_0_1 MATURE 1 0.47 0 0.00 1 0.93 24
......................................ACTCTGTGCTGAATGTCAAGTTt.............. 30014_0_0_0_0_0_1 MATURE 1 0.47 0 0.00 1 0.93 22
---------- ---------- ----------
212 105 107
(49.53) (50.47)
*** OTHER ***
__________________________________________________________________________
AAGCCACAAATGATGAACCTTTTGACGGGCGGACAGAAACTCTGTGCTGAATGTCAAGTTCTGATTTGGCTTTA REF 15 79913281 - 79913354
CTCTGTGCTGAATGTCAAGTTCTGATT MATURE 15 79913321 - 79913420 mmu-miR-1944 -
__________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..GCgACAAATGATGAACCTTTT.................................................... 31013_2_0_0_0_0_71 OTHER 73 57.48 2 9.52 71 66.98 2G18
..GCgACAAATGATGAACCTTTTG................................................... 20372_3_0_0_0_0_5 OTHER 8 6.30 3 14.29 5 4.72 2G19
.....ACAAATGATGAACCTTTTGACGaGC............................................. 40086_0_0_0_0_0_5 OTHER 5 3.94 0 0.00 5 4.72 22A2
....CACAAATGATGAACCTTTTGACG................................................ 42186_1_0_0_0_0_2 OTHER 3 2.36 1 4.76 2 1.89 23
.....ACAAATGATGAACCTTTTGACGG............................................... 39634_2_0_0_0_0_1 OTHER 3 2.36 2 9.52 1 0.94 23
....CACAAATGATGAACCTTaTGACG................................................ 42771_1_0_0_0_0_2 OTHER 3 2.36 1 4.76 2 1.89 17A5
.....ACAAATGATGAACCTTTTGACGtGC............................................. 32010_0_0_0_0_0_2 OTHER 2 1.57 0 0.00 2 1.89 22T2
.....ACAAATGATGAACCTTTgGACGG............................................... 33769_2_0_0_0_0_0 OTHER 2 1.57 2 9.52 0 0.00 17G5
..............................GGACAGAAACTCTGTGCTGAATGTa.................... 10530_0_0_0_0_0_2 OTHER 2 1.57 0 0.00 2 1.89 24
.....ACAAATGATGAACCTTTTGACG................................................ 11737_1_0_0_0_0_1 OTHER 2 1.57 1 4.76 1 0.94 22
.....ACAAATGATGAACCTTTTGAaGGc.............................................. 35692_0_0_0_0_0_2 OTHER 2 1.57 0 0.00 2 1.89 20A2
.....ACAAATGATGAACCTTTTcACG................................................ 34428_1_0_0_0_0_0 OTHER 1 0.79 1 4.76 0 0.00 18C3
....CACAAATGATGAACCTTTTGACGt............................................... 23462_0_0_0_0_0_1 OTHER 1 0.79 0 0.00 1 0.94 23
.....ACAAATGATGAACCTTTTGACGGa.............................................. 5810_0_0_0_0_0_1 OTHER 1 0.79 0 0.00 1 0.94 23
......CAAATGATGAACCTTaTGACG................................................ 12567_1_0_0_0_0_0 OTHER 1 0.79 1 4.76 0 0.00 15A5
.....ACAAATGATGAACCTTTTGACaGGC............................................. 6514_0_0_0_0_0_1 OTHER 1 0.79 0 0.00 1 0.94 21A3
....CACAAATGATGAACCTTTTGAC................................................. 37976_1_0_0_0_0_0 OTHER 1 0.79 1 4.76 0 0.00 22
....CACAAATGATGAACCTTTTGACGG............................................... 43274_1_0_0_0_0_0 OTHER 1 0.79 1 4.76 0 0.00 24
.....ACAAATGATGAACCTTTTGAaGGGC............................................. 43959_0_0_0_0_0_1 OTHER 1 0.79 0 0.00 1 0.94 20A4
.....ACAAATGATGAACCTTTTGACc................................................ 16767_0_0_0_0_0_1 OTHER 1 0.79 0 0.00 1 0.94 21
....CACAAATGATGAACCTTTaGACGG............................................... 31297_0_0_0_0_0_1 OTHER 1 0.79 0 0.00 1 0.94 18A5
.....ACAAATGATGAACCTTTTcACGa............................................... 10158_0_0_0_0_0_1 OTHER 1 0.79 0 0.00 1 0.94 18C3
.....ACAAATGATGAACCTTTTGACGa............................................... 35128_1_0_0_0_0_0 OTHER 1 0.79 1 4.76 0 0.00 22
..GCgACAAATGATGAACCTTTTa................................................... 6027_1_0_0_0_0_0 OTHER 1 0.79 1 4.76 0 0.00 2G18
.....ACAAATGATGAACCTTTTGACaGGa............................................. 9189_0_0_0_0_0_1 OTHER 1 0.79 0 0.00 1 0.94 21A2
.....ACAAATGATGAACCTTTTGAa................................................. 17015_1_0_0_0_0_0 OTHER 1 0.79 1 4.76 0 0.00 20
....CACAAATGATGAACCTTTcGACGa............................................... 663_1_0_0_0_0_0 OTHER 1 0.79 1 4.76 0 0.00 18C4
....CACAAATGATGAACCTTaTGACa................................................ 31247_1_0_0_0_0_0 OTHER 1 0.79 1 4.76 0 0.00 17A4
.............................CGGACAGAAACTCTGTGCTGAATGT..................... 9507_0_0_0_0_0_1 OTHER 1 0.79 0 0.00 1 0.94 25
.....ACAAATGATGAACCTTTTGACGGGC............................................. 7343_0_0_0_0_0_1 OTHER 1 0.79 0 0.00 1 0.94 25
..GCgACAAATGATGAACCTTTTGACG................................................ 41828_0_0_0_0_0_1 OTHER 1 0.79 0 0.00 1 0.94 2G22
......CAAATGATGAACCTTTTGACGaGC............................................. 11492_0_0_0_0_0_1 OTHER 1 0.79 0 0.00 1 0.94 21A2
.....ACAAATGATGAACCTTTTGAC................................................. 25844_0_0_0_0_0_1 OTHER 1 0.79 0 0.00 1 0.94 21
---------- ---------- ----------
127 21 106
(16.54) (83.46)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 105 107 212 62.54%
OTHER 21 106 127 37.46%
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126 213 339
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