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REFERENCE HAIRPIN
****************************************************************************************
ID                 : mmu-mir-194-1
DESCRIPTION        : mmu-mir-194-1 MI0000236 Mus musculus miR-194-1 stem-loop
CHROMOSOME         : 1
SPAN               : 187137198 - 187137264
LENGTH             : 67
SEQUENCE           : ATCGGGTGTAACAGCAACTCCATGTGGACTGTGCTCGGATTCCAGTGGAGCTGCTGTTACTTCTGAT
OVERHANG THRESHOLD : 40%
****************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-194
ACCID      : MI0000236
PARENT     : mmu-mir-194-1
CHROMOSOME : 1
START      : 187137198
STOP       : 187137264
OFFSET     : 7..28
SEQUENCE   : TGTAACAGCAACTCCATGTGGA
STRAND     : +
******************************



*** MATURE ***
___________________________________________________________________
ATCGGGTGTAACAGCAACTCCATGTGGACTGTGCTCGGATTCCAGTGGAGCTGCTGTTACTTCTGAT REF                  1                    187137198 - 187137264 
      TGTAACAGCAACTCCATGTGGA                                        MATURE               1                    187137205 - 187137292 mmu-miR-194          +                    
___________________________________________________________________

                                                               -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
....GGTGTAACAGCAACTCCAaGTGG.........................................   30516_2_0_0_0_0_1       MATURE            3        15.79            2        20.00            1        11.11                      18A4   
....GGTGTAACAGCAACTCCATaTGGA........................................   29679_1_0_0_0_0_1       MATURE            2        10.53            1        10.00            1        11.11                      19A4   
....GGTGTAACAGCAACTCCATGTGG.........................................   38715_1_0_0_0_0_1       MATURE            2        10.53            1        10.00            1        11.11                        23   
.....GTGTAACAGCAACTCCATGTaGAt.......................................    5237_1_0_0_0_0_0       MATURE            1         5.26            1        10.00            0         0.00                      20A2   
....GGTGTAACAGCAACTCCAaGTGGA........................................   19974_1_0_0_0_0_0       MATURE            1         5.26            1        10.00            0         0.00                      18A5   
....GGTGTAACAGCAACTCCATaTGG.........................................   34924_1_0_0_0_0_0       MATURE            1         5.26            1        10.00            0         0.00                      19A3   
.....GTGTAACAGCAACTCCATaTGG.........................................    3692_0_0_0_0_0_1       MATURE            1         5.26            0         0.00            1        11.11                      18A3   
.....GTGTAACAGCAACTCCATGTGGg........................................   30323_1_0_0_0_0_0       MATURE            1         5.26            1        10.00            0         0.00                        22   
....GGTGTAACAGCAACTCCATcTGG.........................................   18481_1_0_0_0_0_0       MATURE            1         5.26            1        10.00            0         0.00                      19C3   
.....GTGTAACAGCAACTCCAcGTGGA........................................   37471_0_0_0_0_0_1       MATURE            1         5.26            0         0.00            1        11.11                      17C5   
.....GTGTAACAGCAACTCCATGTGt.........................................   25480_0_0_0_0_0_1       MATURE            1         5.26            0         0.00            1        11.11                        21   
....GGTGTAACAGCAACTCCtTGTGG.........................................    2414_0_0_0_0_0_1       MATURE            1         5.26            0         0.00            1        11.11                      17T5   
.....GTGTAACAGCAACTCCATGTaGA........................................    4928_0_0_0_0_0_1       MATURE            1         5.26            0         0.00            1        11.11                      20A2   
.....GTGTAACAGCAACTCCATGTGG.........................................    8184_1_0_0_0_0_0       MATURE            1         5.26            1        10.00            0         0.00                        22   
.TCcGGTGTAACAGCAACTCCATGT...........................................   40057_0_0_0_0_0_1       MATURE            1         5.26            0         0.00            1        11.11                      2C21   
                                                                                                        ----------                ----------                ----------   
                                                                                                                19                        10                         9                                          
                                                                                                                                     (52.63)                   (47.37)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              10               9              19         100.00%
                     ----------      ----------      ----------                
                             10               9              19                



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