[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************************
ID                 : mmu-mir-18b
DESCRIPTION        : mmu-mir-18b MI0005483 Mus musculus miR-18b stem-loop
CHROMOSOME         : X
SPAN               : 50095508 - 50095590
LENGTH             : 83
SEQUENCE           : TCTCTTGTGTTAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTACAATCTACTGCCCTAAATGCCCCTTCTCGCACAGGCTA
OVERHANG THRESHOLD : 40%
********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-18b
ACCID      : MI0005483
PARENT     : mmu-mir-18b
CHROMOSOME : X
START      : 50095508
STOP       : 50095590
OFFSET     : 11..33
SEQUENCE   : TAAGGTGCATCTAGTGCTGTTAG
STRAND     : -
******************************



*** MATURE ***
___________________________________________________________________________________
TCTCTTGTGTTAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTACAATCTACTGCCCTAAATGCCCCTTCTCGCACAGGCTA REF                  X                    50095508 - 50095590  
          TAAGGTGCATCTAGTGCTGTTAG                                                   MATURE               X                    50095519 - 50095623  mmu-miR-18b          -                    
___________________________________________________________________________________

                                                                               -SEQ-               -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..........TAAGGTGCATCTAGTGCTGaTAG...................................................   29726_9_0_0_0_0_25       MATURE           34        27.87            9        18.00           25        34.72                      19A3   
..........TAAGGTGCATCTAGTGCTGTTAG...................................................   16958_15_0_0_0_0_7       MATURE           22        18.03           15        30.00            7         9.72                        23   
..........TAAGGTGCATCTAGTGCTGTTA....................................................     6386_7_0_0_0_0_4       MATURE           11         9.02            7        14.00            4         5.56                        22   
..........TAAGGTGCATCTAGTGCTGaTA....................................................    38639_2_0_0_0_0_8       MATURE           10         8.20            2         4.00            8        11.11                      19A2   
..........TAAGGTGCATCTAGTGCTGaTAt...................................................    29277_3_0_0_0_0_2       MATURE            5         4.10            3         6.00            2         2.78                      19A2   
..........TAAGGTGCATCTAGTGCTGTTAt...................................................    17224_2_0_0_0_0_2       MATURE            4         3.28            2         4.00            2         2.78                        22   
..........TAAGGTGCATCTAGTGaTGTTA....................................................     1201_1_0_0_0_0_2       MATURE            3         2.46            1         2.00            2         2.78                      16A5   
..........TAAGGTGCATCTAGTGCaGTTAG...................................................    36829_2_0_0_0_0_1       MATURE            3         2.46            2         4.00            1         1.39                      17A5   
..........TAAGGTGCATCTAGTGCTGTTAGT..................................................    30216_0_0_0_0_0_2       MATURE            2         1.64            0         0.00            2         2.78                        24   
..........TAAGGTGCATCTAGTGCcGTTAG...................................................    30540_1_0_0_0_0_1       MATURE            2         1.64            1         2.00            1         1.39                      17C5   
..........TAAGGTGCATCTAGTGCTGaTAa...................................................    10921_0_0_0_0_0_2       MATURE            2         1.64            0         0.00            2         2.78                      19A2   
..........TAAGGTGCATCTAGTGCTGcTAG...................................................    37404_1_0_0_0_0_0       MATURE            1         0.82            1         2.00            0         0.00                      19C3   
..........TAAGGTGCATCTAGTGCcGTTA....................................................     7798_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                      17C4   
..........TAAGGTGCATCTAGTGCTGTTAa...................................................    20346_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                        22   
..........TAAGGTGCATCTAGTGCTaTTA....................................................      642_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                      18A3   
..........TAAGGTGCATCTAGTGCTaTT.....................................................    19467_1_0_0_0_0_0       MATURE            1         0.82            1         2.00            0         0.00                      18A2   
..........TAAGGTGCATCTAGTGCTaTTAG...................................................    34842_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                      18A4   
..........TAAGGTGCATCTAGTGCTGa......................................................    24488_1_0_0_0_0_0       MATURE            1         0.82            1         2.00            0         0.00                        19   
..........TAAGGTGCATCTAGTGCTGTTg....................................................    25229_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                        21   
..........TAAGGTGCATCTAGTGCTGaTAc...................................................     9193_1_0_0_0_0_0       MATURE            1         0.82            1         2.00            0         0.00                      19A2   
..........TAAGGTGCATCTAGTGCTaTTAt...................................................    24617_1_0_0_0_0_0       MATURE            1         0.82            1         2.00            0         0.00                      18A3   
..........TAAGGTGCATCTAGTGCTGTTAGc..................................................    42457_1_0_0_0_0_0       MATURE            1         0.82            1         2.00            0         0.00                        23   
...........AAGGTGCATCTAGTGCTGTTAGT..................................................    24829_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                        23   
..........TAAGGTGCATCTAGTGCgGTTAG...................................................    22494_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                      17G5   
..........TAAGGTGCATCTAGTGaTGTTt....................................................    36433_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                      16A4   
.........TTAAGGTGCATCTAGTGCTaTTAG...................................................    28118_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                      19A4   
..........TAAGGTGCATCTAGTGCTGTT.....................................................    27411_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                        21   
...........AAGGTGCATCTAGTGCTGTTAGg..................................................    15919_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                        22   
..........TAAGGTGCATCTAGTGgTGTTA....................................................    19709_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                      16G5   
..........TAAGGTGCATCTAGTGCaGTTAGT..................................................    39746_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                      17A6   
..........TAAGGTGCATCTAGTGtTGTTA....................................................    40759_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                      16T5   
..........TAAGGTGCATCTAGTaCTGTT.....................................................    19486_1_0_0_0_0_0       MATURE            1         0.82            1         2.00            0         0.00                      15A5   
..........TAAGGTGCATCTAGTGCTGgTAt...................................................    38413_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                      19G2   
..........TAAGGTGCATCTAGTGCTGg......................................................     7923_0_0_0_0_0_1       MATURE            1         0.82            0         0.00            1         1.39                        19   
............AGGTGCATCTAGTGCTGaTAG...................................................      180_1_0_0_0_0_0       MATURE            1         0.82            1         2.00            0         0.00                      17A3   
                                                                                                                         ----------                ----------                ----------   
                                                                                                                                122                        50                        72                                          
                                                                                                                                                      (40.98)                   (59.02)                                       




*** OTHER ***
___________________________________________________________________________________
TCTCTTGTGTTAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTACAATCTACTGCCCTAAATGCCCCTTCTCGCACAGGCTA REF                  X                    50095508 - 50095590  
          TAAGGTGCATCTAGTGCTGTTAG                                                   MATURE               X                    50095519 - 50095623  mmu-miR-18b          -                    
___________________________________________________________________________________

                                                                               -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................................................ACTGCCCTAAATGCCCCTTCTa...........       5421_1_0_0_0_0_0        OTHER            1        33.33            1        50.00            0         0.00                        21   
....................................................CTGCCCTAAATGCCCCTTCT............      31576_0_0_0_0_0_1        OTHER            1        33.33            0         0.00            1       100.00                        20   
.....................................................TGCCCTAAATGCCCCTTCTt...........       8503_1_0_0_0_0_0        OTHER            1        33.33            1        50.00            0         0.00                        19   
                                                                                                                           ----------                ----------                ----------   
                                                                                                                                    3                         2                         1                                          
                                                                                                                                                        (66.67)                   (33.33)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              50              72             122          97.60%
          OTHER               2               1               3           2.40%
                     ----------      ----------      ----------                
                             52              73             125                



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