[BEGIN]
REFERENCE HAIRPIN
********************************************************************************************************
ID : mmu-mir-18b
DESCRIPTION : mmu-mir-18b MI0005483 Mus musculus miR-18b stem-loop
CHROMOSOME : X
SPAN : 50095508 - 50095590
LENGTH : 83
SEQUENCE : TCTCTTGTGTTAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTACAATCTACTGCCCTAAATGCCCCTTCTCGCACAGGCTA
OVERHANG THRESHOLD : 40%
********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-18b
ACCID : MI0005483
PARENT : mmu-mir-18b
CHROMOSOME : X
START : 50095508
STOP : 50095590
OFFSET : 11..33
SEQUENCE : TAAGGTGCATCTAGTGCTGTTAG
STRAND : -
******************************
*** MATURE ***
___________________________________________________________________________________
TCTCTTGTGTTAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTACAATCTACTGCCCTAAATGCCCCTTCTCGCACAGGCTA REF X 50095508 - 50095590
TAAGGTGCATCTAGTGCTGTTAG MATURE X 50095519 - 50095623 mmu-miR-18b -
___________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........TAAGGTGCATCTAGTGCTGaTAG................................................... 29726_9_0_0_0_0_25 MATURE 34 27.87 9 18.00 25 34.72 19A3
..........TAAGGTGCATCTAGTGCTGTTAG................................................... 16958_15_0_0_0_0_7 MATURE 22 18.03 15 30.00 7 9.72 23
..........TAAGGTGCATCTAGTGCTGTTA.................................................... 6386_7_0_0_0_0_4 MATURE 11 9.02 7 14.00 4 5.56 22
..........TAAGGTGCATCTAGTGCTGaTA.................................................... 38639_2_0_0_0_0_8 MATURE 10 8.20 2 4.00 8 11.11 19A2
..........TAAGGTGCATCTAGTGCTGaTAt................................................... 29277_3_0_0_0_0_2 MATURE 5 4.10 3 6.00 2 2.78 19A2
..........TAAGGTGCATCTAGTGCTGTTAt................................................... 17224_2_0_0_0_0_2 MATURE 4 3.28 2 4.00 2 2.78 22
..........TAAGGTGCATCTAGTGaTGTTA.................................................... 1201_1_0_0_0_0_2 MATURE 3 2.46 1 2.00 2 2.78 16A5
..........TAAGGTGCATCTAGTGCaGTTAG................................................... 36829_2_0_0_0_0_1 MATURE 3 2.46 2 4.00 1 1.39 17A5
..........TAAGGTGCATCTAGTGCTGTTAGT.................................................. 30216_0_0_0_0_0_2 MATURE 2 1.64 0 0.00 2 2.78 24
..........TAAGGTGCATCTAGTGCcGTTAG................................................... 30540_1_0_0_0_0_1 MATURE 2 1.64 1 2.00 1 1.39 17C5
..........TAAGGTGCATCTAGTGCTGaTAa................................................... 10921_0_0_0_0_0_2 MATURE 2 1.64 0 0.00 2 2.78 19A2
..........TAAGGTGCATCTAGTGCTGcTAG................................................... 37404_1_0_0_0_0_0 MATURE 1 0.82 1 2.00 0 0.00 19C3
..........TAAGGTGCATCTAGTGCcGTTA.................................................... 7798_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 17C4
..........TAAGGTGCATCTAGTGCTGTTAa................................................... 20346_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 22
..........TAAGGTGCATCTAGTGCTaTTA.................................................... 642_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 18A3
..........TAAGGTGCATCTAGTGCTaTT..................................................... 19467_1_0_0_0_0_0 MATURE 1 0.82 1 2.00 0 0.00 18A2
..........TAAGGTGCATCTAGTGCTaTTAG................................................... 34842_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 18A4
..........TAAGGTGCATCTAGTGCTGa...................................................... 24488_1_0_0_0_0_0 MATURE 1 0.82 1 2.00 0 0.00 19
..........TAAGGTGCATCTAGTGCTGTTg.................................................... 25229_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 21
..........TAAGGTGCATCTAGTGCTGaTAc................................................... 9193_1_0_0_0_0_0 MATURE 1 0.82 1 2.00 0 0.00 19A2
..........TAAGGTGCATCTAGTGCTaTTAt................................................... 24617_1_0_0_0_0_0 MATURE 1 0.82 1 2.00 0 0.00 18A3
..........TAAGGTGCATCTAGTGCTGTTAGc.................................................. 42457_1_0_0_0_0_0 MATURE 1 0.82 1 2.00 0 0.00 23
...........AAGGTGCATCTAGTGCTGTTAGT.................................................. 24829_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 23
..........TAAGGTGCATCTAGTGCgGTTAG................................................... 22494_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 17G5
..........TAAGGTGCATCTAGTGaTGTTt.................................................... 36433_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 16A4
.........TTAAGGTGCATCTAGTGCTaTTAG................................................... 28118_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 19A4
..........TAAGGTGCATCTAGTGCTGTT..................................................... 27411_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 21
...........AAGGTGCATCTAGTGCTGTTAGg.................................................. 15919_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 22
..........TAAGGTGCATCTAGTGgTGTTA.................................................... 19709_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 16G5
..........TAAGGTGCATCTAGTGCaGTTAGT.................................................. 39746_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 17A6
..........TAAGGTGCATCTAGTGtTGTTA.................................................... 40759_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 16T5
..........TAAGGTGCATCTAGTaCTGTT..................................................... 19486_1_0_0_0_0_0 MATURE 1 0.82 1 2.00 0 0.00 15A5
..........TAAGGTGCATCTAGTGCTGgTAt................................................... 38413_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 19G2
..........TAAGGTGCATCTAGTGCTGg...................................................... 7923_0_0_0_0_0_1 MATURE 1 0.82 0 0.00 1 1.39 19
............AGGTGCATCTAGTGCTGaTAG................................................... 180_1_0_0_0_0_0 MATURE 1 0.82 1 2.00 0 0.00 17A3
---------- ---------- ----------
122 50 72
(40.98) (59.02)
*** OTHER ***
___________________________________________________________________________________
TCTCTTGTGTTAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTACAATCTACTGCCCTAAATGCCCCTTCTCGCACAGGCTA REF X 50095508 - 50095590
TAAGGTGCATCTAGTGCTGTTAG MATURE X 50095519 - 50095623 mmu-miR-18b -
___________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...................................................ACTGCCCTAAATGCCCCTTCTa........... 5421_1_0_0_0_0_0 OTHER 1 33.33 1 50.00 0 0.00 21
....................................................CTGCCCTAAATGCCCCTTCT............ 31576_0_0_0_0_0_1 OTHER 1 33.33 0 0.00 1 100.00 20
.....................................................TGCCCTAAATGCCCCTTCTt........... 8503_1_0_0_0_0_0 OTHER 1 33.33 1 50.00 0 0.00 19
---------- ---------- ----------
3 2 1
(66.67) (33.33)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 50 72 122 97.60%
OTHER 2 1 3 2.40%
---------- ---------- ----------
52 73 125
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