[BEGIN]

REFERENCE HAIRPIN
*****************************************************************************************
ID                 : mmu-mir-188
DESCRIPTION        : mmu-mir-188 MI0000230 Mus musculus miR-188 stem-loop
CHROMOSOME         : X
SPAN               : 6825115 - 6825182
LENGTH             : 68
SEQUENCE           : TCTCACATCCCTTGCATGGTGGAGGGTGAGCTCTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGA
OVERHANG THRESHOLD : 40%
*****************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-188-3p
ACCID      : MI0000230
PARENT     : mmu-mir-188
CHROMOSOME : X
START      : 6825115
STOP       : 6825182
OFFSET     : 45..65
SEQUENCE   : CTCCCACATGCAGGGTTTGCA
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-188-5p
ACCID      : MI0000230
PARENT     : mmu-mir-188
CHROMOSOME : X
START      : 6825115
STOP       : 6825182
OFFSET     : 6..26
SEQUENCE   : CATCCCTTGCATGGTGGAGGG
STRAND     : -
******************************



*** MATURE-3P ***
____________________________________________________________________
TCTCACATCCCTTGCATGGTGGAGGGTGAGCTCTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGA REF                  X                    6825115 - 6825182    
                                            CTCCCACATGCAGGGTTTGCA    MATURE-3P            X                    6825160 - 6825247    mmu-miR-188-3p       -                    
     CATCCCTTGCATGGTGGAGGG                                           MATURE-5P            X                    6825121 - 6825208    mmu-miR-188-5p       -                    
____________________________________________________________________

                                                                -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........................................CCTCCCACATGCAGGaTTTGC.....   11338_1_0_0_0_0_0    MATURE-3P            1       100.00            1       100.00            0            0                      15A5   
                                                                                                         ----------                ----------                ----------   
                                                                                                                  1                         1                         0                                          
                                                                                                                                     (100.00)                    (0.00)                                       




*** MATURE-5P ***
____________________________________________________________________
TCTCACATCCCTTGCATGGTGGAGGGTGAGCTCTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGA REF                  X                    6825115 - 6825182    
                                            CTCCCACATGCAGGGTTTGCA    MATURE-3P            X                    6825160 - 6825247    mmu-miR-188-3p       -                    
     CATCCCTTGCATGGTGGAGGG                                           MATURE-5P            X                    6825121 - 6825208    mmu-miR-188-5p       -                    
____________________________________________________________________

                                                                -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....CATCCCTTGCATGGTGGAGGGTa.........................................   41638_0_0_0_0_0_2    MATURE-5P            2        15.38            0         0.00            2        22.22                        22   
.....CATCCCTTGCATGGTGGAGGGTt.........................................   40627_0_0_0_0_0_2    MATURE-5P            2        15.38            0         0.00            2        22.22                        22   
.....CATCCCTTGCATGGTGGAGa............................................   30875_0_0_0_0_0_1    MATURE-5P            1         7.69            0         0.00            1        11.11                        19   
.....CATCCCTTGCATGGTGGcGGGT..........................................   35277_1_0_0_0_0_0    MATURE-5P            1         7.69            1        25.00            0         0.00                      17C4   
.....CATCCCTTGCATGGTGGAGGt...........................................   22807_1_0_0_0_0_0    MATURE-5P            1         7.69            1        25.00            0         0.00                        20   
......ATCCCTTGCATGGTGGAGtGTGA........................................    8940_1_0_0_0_0_0    MATURE-5P            1         7.69            1        25.00            0         0.00                      18T4   
.....CATCCCTTGCATGGTGGAGGGTc.........................................    1918_0_0_0_0_0_1    MATURE-5P            1         7.69            0         0.00            1        11.11                        22   
.....CATCCCTTGCATGGTGGAGGGa..........................................   12171_0_0_0_0_0_1    MATURE-5P            1         7.69            0         0.00            1        11.11                        21   
.....CATCCCTTGCATGGTGGAGG............................................   21805_0_0_0_0_0_1    MATURE-5P            1         7.69            0         0.00            1        11.11                        20   
...CACATCCCTTGCATGGTGGAGGG...........................................   36424_0_0_0_0_0_1    MATURE-5P            1         7.69            0         0.00            1        11.11                        23   
....ACATCCCTTGCATGGTGGAGGt...........................................   32110_1_0_0_0_0_0    MATURE-5P            1         7.69            1        25.00            0         0.00                        21   
                                                                                                         ----------                ----------                ----------   
                                                                                                                 13                         4                         9                                          
                                                                                                                                      (30.77)                   (69.23)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               1               0               1           7.14%
      MATURE-5P               4               9              13          92.86%
                     ----------      ----------      ----------                
                              5               9              14                



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