[BEGIN]
REFERENCE HAIRPIN
*****************************************************************************************
ID : mmu-mir-188
DESCRIPTION : mmu-mir-188 MI0000230 Mus musculus miR-188 stem-loop
CHROMOSOME : X
SPAN : 6825115 - 6825182
LENGTH : 68
SEQUENCE : TCTCACATCCCTTGCATGGTGGAGGGTGAGCTCTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGA
OVERHANG THRESHOLD : 40%
*****************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-188-3p
ACCID : MI0000230
PARENT : mmu-mir-188
CHROMOSOME : X
START : 6825115
STOP : 6825182
OFFSET : 45..65
SEQUENCE : CTCCCACATGCAGGGTTTGCA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-188-5p
ACCID : MI0000230
PARENT : mmu-mir-188
CHROMOSOME : X
START : 6825115
STOP : 6825182
OFFSET : 6..26
SEQUENCE : CATCCCTTGCATGGTGGAGGG
STRAND : -
******************************
*** MATURE-3P ***
____________________________________________________________________
TCTCACATCCCTTGCATGGTGGAGGGTGAGCTCTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGA REF X 6825115 - 6825182
CTCCCACATGCAGGGTTTGCA MATURE-3P X 6825160 - 6825247 mmu-miR-188-3p -
CATCCCTTGCATGGTGGAGGG MATURE-5P X 6825121 - 6825208 mmu-miR-188-5p -
____________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........................................CCTCCCACATGCAGGaTTTGC..... 11338_1_0_0_0_0_0 MATURE-3P 1 100.00 1 100.00 0 0 15A5
---------- ---------- ----------
1 1 0
(100.00) (0.00)
*** MATURE-5P ***
____________________________________________________________________
TCTCACATCCCTTGCATGGTGGAGGGTGAGCTCTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGA REF X 6825115 - 6825182
CTCCCACATGCAGGGTTTGCA MATURE-3P X 6825160 - 6825247 mmu-miR-188-3p -
CATCCCTTGCATGGTGGAGGG MATURE-5P X 6825121 - 6825208 mmu-miR-188-5p -
____________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....CATCCCTTGCATGGTGGAGGGTa......................................... 41638_0_0_0_0_0_2 MATURE-5P 2 15.38 0 0.00 2 22.22 22
.....CATCCCTTGCATGGTGGAGGGTt......................................... 40627_0_0_0_0_0_2 MATURE-5P 2 15.38 0 0.00 2 22.22 22
.....CATCCCTTGCATGGTGGAGa............................................ 30875_0_0_0_0_0_1 MATURE-5P 1 7.69 0 0.00 1 11.11 19
.....CATCCCTTGCATGGTGGcGGGT.......................................... 35277_1_0_0_0_0_0 MATURE-5P 1 7.69 1 25.00 0 0.00 17C4
.....CATCCCTTGCATGGTGGAGGt........................................... 22807_1_0_0_0_0_0 MATURE-5P 1 7.69 1 25.00 0 0.00 20
......ATCCCTTGCATGGTGGAGtGTGA........................................ 8940_1_0_0_0_0_0 MATURE-5P 1 7.69 1 25.00 0 0.00 18T4
.....CATCCCTTGCATGGTGGAGGGTc......................................... 1918_0_0_0_0_0_1 MATURE-5P 1 7.69 0 0.00 1 11.11 22
.....CATCCCTTGCATGGTGGAGGGa.......................................... 12171_0_0_0_0_0_1 MATURE-5P 1 7.69 0 0.00 1 11.11 21
.....CATCCCTTGCATGGTGGAGG............................................ 21805_0_0_0_0_0_1 MATURE-5P 1 7.69 0 0.00 1 11.11 20
...CACATCCCTTGCATGGTGGAGGG........................................... 36424_0_0_0_0_0_1 MATURE-5P 1 7.69 0 0.00 1 11.11 23
....ACATCCCTTGCATGGTGGAGGt........................................... 32110_1_0_0_0_0_0 MATURE-5P 1 7.69 1 25.00 0 0.00 21
---------- ---------- ----------
13 4 9
(30.77) (69.23)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 1 0 1 7.14%
MATURE-5P 4 9 13 92.86%
---------- ---------- ----------
5 9 14
[END]