[BEGIN]

REFERENCE HAIRPIN
************************************************************************************************
ID                 : mmu-mir-182
DESCRIPTION        : mmu-mir-182 MI0000224 Mus musculus miR-182 stem-loop
CHROMOSOME         : 6
SPAN               : 30115918 - 30115992
LENGTH             : 75
SEQUENCE           : ACCATTTTTGGCAATGGTAGAACTCACACCGGTAAGGTAATGGGACCCGGTGGTTCTAGACTTGCCAACTATGGT
OVERHANG THRESHOLD : 40%
************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-182
ACCID      : MI0000224
PARENT     : mmu-mir-182
CHROMOSOME : 6
START      : 30115918
STOP       : 30115992
OFFSET     : 7..31
SEQUENCE   : TTTGGCAATGGTAGAACTCACACCG
STRAND     : -
******************************



*** MATURE ***
___________________________________________________________________________
ACCATTTTTGGCAATGGTAGAACTCACACCGGTAAGGTAATGGGACCCGGTGGTTCTAGACTTGCCAACTATGGT REF                  6                    30115918 - 30115992  
      TTTGGCAATGGTAGAACTCACACCG                                             MATURE               6                    30115925 - 30116023  mmu-miR-182          -                    
___________________________________________________________________________

                                                                       -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......TTTGGCAATGGTAGAACTtACACC..............................................   22589_0_0_0_0_0_2       MATURE            2        14.29            0         0.00            2        16.67                      18T5   
............AATGGTAGAACTCACACCG.............................................   42704_0_0_0_0_0_1       MATURE            1         7.14            0         0.00            1         8.33                        19   
.......TTGGCAATGGTAGAACTCACAgCGt............................................   36662_0_0_0_0_0_1       MATURE            1         7.14            0         0.00            1         8.33                      21G2   
.......TTGGCAATGGTAGAACTCACACa..............................................    7620_0_0_0_0_0_1       MATURE            1         7.14            0         0.00            1         8.33                        22   
.......TTGGCAATGGTAGAACTCACAC...............................................   26268_0_0_0_0_0_1       MATURE            1         7.14            0         0.00            1         8.33                        22   
.......TTGGCAATGGTAGAACTCACACCGa............................................   25336_0_0_0_0_0_1       MATURE            1         7.14            0         0.00            1         8.33                        24   
.......TTGGCAATGGTAGAACTCACACCG.............................................   12241_0_0_0_0_0_1       MATURE            1         7.14            0         0.00            1         8.33                        24   
......TTTGGCAATGGTAGAACTCACgCC..............................................   28217_0_0_0_0_0_1       MATURE            1         7.14            0         0.00            1         8.33                      21G2   
.......TTGGCAATGGTAGAACTCAaACCGt............................................   17496_0_0_0_0_0_1       MATURE            1         7.14            0         0.00            1         8.33                      19A4   
.......TTGGCAATGGTAGAACcCACAC...............................................   32318_0_0_0_0_0_1       MATURE            1         7.14            0         0.00            1         8.33                      16C5   
.......TTGGCAATGGTAGAACTaACAC...............................................   38667_1_0_0_0_0_0       MATURE            1         7.14            1        50.00            0         0.00                      17A4   
......TTTGGCAATGGTAGAACTCACACa..............................................    9447_0_0_0_0_0_1       MATURE            1         7.14            0         0.00            1         8.33                        23   
...ATTgTTGGCAATGGTAGAACTCACA................................................   17024_1_0_0_0_0_0       MATURE            1         7.14            1        50.00            0         0.00                      3G21   
                                                                                                                ----------                ----------                ----------   
                                                                                                                        14                         2                        12                                          
                                                                                                                                             (14.29)                   (85.71)                                       




*** OTHER ***
___________________________________________________________________________
ACCATTTTTGGCAATGGTAGAACTCACACCGGTAAGGTAATGGGACCCGGTGGTTCTAGACTTGCCAACTATGGT REF                  6                    30115918 - 30115992  
      TTTGGCAATGGTAGAACTCACACCG                                             MATURE               6                    30115925 - 30116023  mmu-miR-182          -                    
___________________________________________________________________________

                                                                       -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..............................GGTAAGGTAATGGGACCCGG..........................   34822_0_0_0_0_0_1        OTHER            1       100.00            0            0            1       100.00                        20   
                                                                                                                ----------                ----------                ----------   
                                                                                                                         1                         0                         1                                          
                                                                                                                                              (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               2              12              14          93.33%
          OTHER               0               1               1           6.67%
                     ----------      ----------      ----------                
                              2              13              15                



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