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REFERENCE HAIRPIN
*********************************************************************************************
ID                 : mmu-mir-181d
DESCRIPTION        : mmu-mir-181d MI0005450 Mus musculus miR-181d stem-loop
CHROMOSOME         : 8
SPAN               : 86702615 - 86702686
LENGTH             : 72
SEQUENCE           : ACAATTAACATTCATTGTTGTCGGTGGGTTGTGAGGAGGCAGCCAGACCCACCGGGGGATGAATGTCACTGT
OVERHANG THRESHOLD : 40%
*********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-181d
ACCID      : MI0005450
PARENT     : mmu-mir-181d
CHROMOSOME : 8
START      : 86702615
STOP       : 86702686
OFFSET     : 7..29
SEQUENCE   : AACATTCATTGTTGTCGGTGGGT
STRAND     : -
******************************



*** MATURE ***
________________________________________________________________________
ACAATTAACATTCATTGTTGTCGGTGGGTTGTGAGGAGGCAGCCAGACCCACCGGGGGATGAATGTCACTGT REF                  8                    86702615 - 86702686  
      AACATTCATTGTTGTCGGTGGGT                                            MATURE               8                    86702622 - 86702715  mmu-miR-181d         -                    
________________________________________________________________________

                                                                    -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......AACATTCATTGTTGTCGGTGGGTT...........................................       8112_3_0_0_0_0_8       MATURE           11        16.42            3        16.67            8        16.33                        24   
......AACATTCATTGTTGTCGGTaGGTT...........................................       9596_0_0_0_0_0_7       MATURE            7        10.45            0         0.00            7        14.29                      19A4   
......AACATTCATTGTTGTCGGaGGGTT...........................................       6489_1_0_0_0_0_4       MATURE            5         7.46            1         5.56            4         8.16                      18A5   
......AACATTCATTGTTGTCGGTGGGT............................................      23829_2_0_0_0_0_2       MATURE            4         5.97            2        11.11            2         4.08                        23   
......AACATTCATTGTTGTCGGTGGGTa...........................................      29972_1_0_0_0_0_3       MATURE            4         5.97            1         5.56            3         6.12                        23   
......AACATTCATTGTTGTCGGTaGGT............................................      21987_3_0_0_0_0_0       MATURE            3         4.48            3        16.67            0         0.00                      19A3   
......AACATTCATTGTTGTCGGTGaGTT...........................................       7270_1_0_0_0_0_2       MATURE            3         4.48            1         5.56            2         4.08                      20A3   
.......ACATTCATTGTTGTCGGTGaGTT...........................................      17456_0_0_0_0_0_2       MATURE            2         2.99            0         0.00            2         4.08                      19A3   
......AACATTCATTGTTGTCGGTGGaTT...........................................      31628_0_0_0_0_0_2       MATURE            2         2.99            0         0.00            2         4.08                      21A2   
......AACATTCATTGTTGTCGGTGGtTT...........................................      17168_1_0_0_0_0_1       MATURE            2         2.99            1         5.56            1         2.04                      21T2   
......AACATTCATTGTTGTCGGTGGa.............................................      43582_0_0_0_0_0_2       MATURE            2         2.99            0         0.00            2         4.08                        21   
......AACATTCATTGTTGTCGGTaGG.............................................      39841_0_0_0_0_0_2       MATURE            2         2.99            0         0.00            2         4.08                      19A2   
......AACATTCATTGTTGTCGGTaGGc............................................      34058_1_0_0_0_0_0       MATURE            1         1.49            1         5.56            0         0.00                      19A2   
......AACATTCATTGTTGTCGGTaGGTTt..........................................      30495_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      19A4   
.......ACATTCATTGTTGTCGGaGGGT............................................      15131_1_0_0_0_0_0       MATURE            1         1.49            1         5.56            0         0.00                      17A4   
......AACATTCATTGTTGTCGGTGGt.............................................      13226_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                        21   
..AATgAACATTCATTGTTGTCGGTGa..............................................      30728_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      3G20   
......AACATTCATTGTTGTCGGTGaGTTt..........................................      18693_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      20A3   
......AACATTCATTGTTGTCGtTGGGT............................................      18721_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      17T5   
......AACATTCATTGTTGTCGGTGtGTc...........................................      11604_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      20T2   
......AACATTCATTGTTGTCGGTcGGTTt..........................................       8960_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      19C4   
......AACATTCATTGTTGTCGGTGtGTTt..........................................      24229_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      20T3   
......AACATTCATTGTTGTCGGaGGGTa...........................................      38825_1_0_0_0_0_0       MATURE            1         1.49            1         5.56            0         0.00                      18A4   
......AACATTCATTGTTGTCGGTGa..............................................      24093_1_0_0_0_0_0       MATURE            1         1.49            1         5.56            0         0.00                        20   
......AACATTCATTGTTGTCGGTGaGT............................................      39739_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      20A2   
......AACATTCATTGTTGTCGGTcGGa............................................      28727_1_0_0_0_0_0       MATURE            1         1.49            1         5.56            0         0.00                      19C2   
.......ACATTCATTGTTGTCGGTGaGTTGT.........................................      21202_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      19A5   
......AACATTCATTGTTGTCtGTGG..............................................       8592_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      16T4   
......AACATTCATTGTTGTCGGTGGGTc...........................................      22199_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                        23   
.......ACATTCATTGTTGTCGGTGaGTTt..........................................      16582_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      19A3   
.......ACATTCATTGTTGTCGcTGGGT............................................        123_1_0_0_0_0_0       MATURE            1         1.49            1         5.56            0         0.00                      16C5   
......AACATTCATTGTTGTCGGTcGGTT...........................................      28315_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      19C4   
                                                                                                                ----------                ----------                ----------   
                                                                                                                        67                        18                        49                                          
                                                                                                                                             (26.87)                   (73.13)                                       




*** OTHER ***
________________________________________________________________________
ACAATTAACATTCATTGTTGTCGGTGGGTTGTGAGGAGGCAGCCAGACCCACCGGGGGATGAATGTCACTGT REF                  8                    86702615 - 86702686  
      AACATTCATTGTTGTCGGTGGGT                                            MATURE               8                    86702622 - 86702715  mmu-miR-181d         -                    
________________________________________________________________________

                                                                    -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
........................................AGCCAGACCCACCGGGGGATGAAT.........   37429_0_0_0_0_0_2        OTHER            2       100.00            0            0            2       100.00                        24   
                                                                                                             ----------                ----------                ----------   
                                                                                                                      2                         0                         2                                          
                                                                                                                                           (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              18              49              67          97.10%
          OTHER               0               2               2           2.90%
                     ----------      ----------      ----------                
                             18              51              69                



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