[BEGIN]
REFERENCE HAIRPIN
*************************************************************************************************
ID : mmu-mir-181a-2
DESCRIPTION : mmu-mir-181a-2 MI0000223 Mus musculus mir-181a-2 stem-loop
CHROMOSOME : 2
SPAN : 38708255 - 38708330
LENGTH : 76
SEQUENCE : CCATGGAACATTCAACGCTGTCGGTGAGTTTGGGATTCAAAAACAAAAAAACCACCGACCGTTGACTGTACCTTGG
OVERHANG THRESHOLD : 40%
*************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-181a
ACCID : MI0000223
PARENT : mmu-mir-181a-2
CHROMOSOME : 2
START : 38708255
STOP : 38708330
OFFSET : 7..29
SEQUENCE : AACATTCAACGCTGTCGGTGAGT
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-181a-2*
ACCID : MI0000223
PARENT : mmu-mir-181a-2
CHROMOSOME : 2
START : 38708255
STOP : 38708330
OFFSET : 54..75
SEQUENCE : ACCGACCGTTGACTGTACCTTG
STRAND : +
******************************
*** MATURE ***
____________________________________________________________________________
CCATGGAACATTCAACGCTGTCGGTGAGTTTGGGATTCAAAAACAAAAAAACCACCGACCGTTGACTGTACCTTGG REF 2 38708255 - 38708330
AACATTCAACGCTGTCGGTGAGT MATURE 2 38708262 - 38708359 mmu-miR-181a +
ACCGACCGTTGACTGTACCTTG MATURESTAR 2 38708309 - 38708405 mmu-miR-181a-2* +
____________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....GGAACATTCAACGCTGTCGGaGAGT................................................ 39459_2_0_0_0_0_0 MATURE 2 20.00 2 50.00 0 0.00 20A4
....GGAACATTCAACGCTGTCGGTtAGT................................................ 1003_0_0_0_0_0_2 MATURE 2 20.00 0 0.00 2 33.33 21T3
....GGAACATTCAACGCTGTCGGTGAGT................................................ 30349_0_0_0_0_0_1 MATURE 1 10.00 0 0.00 1 16.67 25
....GGAACATTCAACGCTGTCGGgGAGT................................................ 41642_1_0_0_0_0_0 MATURE 1 10.00 1 25.00 0 0.00 20G4
....GGAACATTCAACGCTGTCGGTtAGa................................................ 28470_0_0_0_0_0_1 MATURE 1 10.00 0 0.00 1 16.67 21T2
....GGAACATTCAACGCTGTCGGaGA.................................................. 32029_0_0_0_0_0_1 MATURE 1 10.00 0 0.00 1 16.67 20A2
....GGAACATTCAACGCTGTtGGTGA.................................................. 36639_1_0_0_0_0_0 MATURE 1 10.00 1 25.00 0 0.00 17T5
....GGAACATTCAACGCTGTCGaTGAGT................................................ 26184_0_0_0_0_0_1 MATURE 1 10.00 0 0.00 1 16.67 19A5
---------- ---------- ----------
10 4 6
(40.00) (60.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 4 6 10 100.00%
---------- ---------- ----------
4 6 10
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