[BEGIN]
REFERENCE HAIRPIN
********************************************************************************************************************
ID : mmu-mir-16-2
DESCRIPTION : mmu-mir-16-2 MI0000566 Mus musculus miR-16-2 stem-loop
CHROMOSOME : 3
SPAN : 68813824 - 68813918
LENGTH : 95
SEQUENCE : CATGCTTGTTCCACTCTAGCAGCACGTAAATATTGGCGTAGTGAAATAAATATTAAACACCAATATTATTGTGCTGCTTTAGTGTGACAGGGATA
OVERHANG THRESHOLD : 40%
********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-16
ACCID : MI0000566
PARENT : mmu-mir-16-2
CHROMOSOME : 3
START : 68813824
STOP : 68813918
OFFSET : 17..38
SEQUENCE : TAGCAGCACGTAAATATTGGCG
STRAND : +
******************************
*** MATURE ***
_______________________________________________________________________________________________
CATGCTTGTTCCACTCTAGCAGCACGTAAATATTGGCGTAGTGAAATAAATATTAAACACCAATATTATTGTGCTGCTTTAGTGTGACAGGGATA REF 3 68813824 - 68813918
TAGCAGCACGTAAATATTGGCG MATURE 3 68813841 - 68813956 mmu-miR-16 +
_______________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................GCAGCACGTAAATATTGGC........................................................... 40371_2_0_0_0_0_12 MATURE 14 7.73 2 4.65 12 8.70 19
................TAGCAGCACGTAAATATTaGCG.......................................................... 43844_1_0_0_0_0_13 MATURE 14 7.73 1 2.33 13 9.42 18A3
................TAGCAGCACGTAAATATTGaCG.......................................................... 32003_2_0_0_0_0_10 MATURE 12 6.63 2 4.65 10 7.25 19A2
................TAGCAGCACGTAAATATTGGCG.......................................................... 20968_3_0_0_0_0_8 MATURE 11 6.08 3 6.98 8 5.80 22
................TAGCAGCACGTAAATATTGGC........................................................... 30640_2_0_0_0_0_8 MATURE 10 5.52 2 4.65 8 5.80 21
................TAGCAGCACGTAAATATTGcCG.......................................................... 24968_2_0_0_0_0_7 MATURE 9 4.97 2 4.65 7 5.07 19C2
................TAGCAGCACGTAAATATTaGCGa......................................................... 34051_2_0_0_0_0_7 MATURE 9 4.97 2 4.65 7 5.07 18A3
................TAGCAGCACGTAAATATTGaCGT......................................................... 4788_3_0_0_0_0_2 MATURE 5 2.76 3 6.98 2 1.45 19A3
................TAGCAGCACGTAAATATTGG............................................................ 41578_3_0_0_0_0_2 MATURE 5 2.76 3 6.98 2 1.45 20
................TAGCAGCACGTAAATATTGGt........................................................... 2577_0_0_0_0_0_4 MATURE 4 2.21 0 0.00 4 2.90 20
................TAGCAGCACGTAAATATTGtCGT......................................................... 8341_2_0_0_0_0_2 MATURE 4 2.21 2 4.65 2 1.45 19T3
................TAGCAGCACGTAAATATTaGCt.......................................................... 34999_1_0_0_0_0_3 MATURE 4 2.21 1 2.33 3 2.17 18A2
................TAGCAGCACGTAAATATTGaCGa......................................................... 18872_0_0_0_0_0_4 MATURE 4 2.21 0 0.00 4 2.90 19A2
................TAGCAGCACGTAAATATTaGC........................................................... 34541_1_0_0_0_0_3 MATURE 4 2.21 1 2.33 3 2.17 18A2
................TAGCAGCACGTAAATATTGaCGTA........................................................ 24398_1_0_0_0_0_2 MATURE 3 1.66 1 2.33 2 1.45 19A4
................TAGCAGCACGTAAATATcGGC........................................................... 43713_0_0_0_0_0_3 MATURE 3 1.66 0 0.00 3 2.17 17C3
................TAGCAGCACGTAAATATaGGC........................................................... 34309_0_0_0_0_0_3 MATURE 3 1.66 0 0.00 3 2.17 17A3
..................GCAGCACGTAAATATTGGCaTAt....................................................... 29863_0_0_0_0_0_3 MATURE 3 1.66 0 0.00 3 2.17 19A2
..............TCTAGCAGCACGTAAATATTGaCGa......................................................... 29645_2_0_0_0_0_0 MATURE 2 1.10 2 4.65 0 0.00 21A2
................TAGCAGCACGTAAATATTGt............................................................ 31633_2_0_0_0_0_0 MATURE 2 1.10 2 4.65 0 0.00 19
................TAGCAGCACGTAAATATTGcCGa......................................................... 13970_0_0_0_0_0_2 MATURE 2 1.10 0 0.00 2 1.45 19C2
...............CTAGCAGCACGTAAATATTaGCGa......................................................... 30151_1_0_0_0_0_1 MATURE 2 1.10 1 2.33 1 0.72 19A3
................TAGCAGCACGTAAATATcGGCGa......................................................... 618_1_0_0_0_0_1 MATURE 2 1.10 1 2.33 1 0.72 17C4
..................GCAGCACGTAAATATTGGaGT......................................................... 44062_1_0_0_0_0_1 MATURE 2 1.10 1 2.33 1 0.72 18A2
................TAGCAGCACGTAAATATTGaCGc......................................................... 35639_0_0_0_0_0_2 MATURE 2 1.10 0 0.00 2 1.45 19A2
................TAGCAGCACGTAAATATTcGCt.......................................................... 2613_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 18C2
................TAGCAGCACGTAAATATcGGCG.......................................................... 42190_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 17C4
..............TCTAGCAGCACGTAAATATTGaCGT......................................................... 24543_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 21A3
...............CTAGCAGCACGTAAAgATTGG............................................................ 44235_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 15G5
................TAGCAGCACGTAAATcTTGGC........................................................... 27570_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 15C5
................TAGtAGCACGTAAATATTGGCa.......................................................... 40551_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 3T17
................TAGCAGCACGTAAATATTGGCtTA........................................................ 31100_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 21T2
................TAGCAGCACGTAAATAaTGGCc.......................................................... 9046_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 16A4
..................GCAGCACGTAAATATTGaCGTAc....................................................... 871_1_0_0_0_0_0 MATURE 1 0.55 1 2.33 0 0.00 17A4
..................GCAGCACGTAAATATTGGCt.......................................................... 4548_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 19
.................AGCAGCACGTAAATATTGGCtTAa....................................................... 33717_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 20T2
................TAGCAGCACGTAAAgATTGGC........................................................... 11967_1_0_0_0_0_0 MATURE 1 0.55 1 2.33 0 0.00 14G6
................TAGCAGCACGTAAATtTTGGC........................................................... 41644_1_0_0_0_0_0 MATURE 1 0.55 1 2.33 0 0.00 15T5
................TAGCAGCACGTAAATAgTGGC........................................................... 38279_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 16G4
..................GCAGCACGTAAATATTGGCGTc........................................................ 41153_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 21
................TAGCAGCACGTAAATATTGtCGa......................................................... 33059_1_0_0_0_0_0 MATURE 1 0.55 1 2.33 0 0.00 19T2
................TAGCAGCACGTAAATATTGGCGTAt....................................................... 43268_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 24
.................AGCAGCACGTAAATATTGGCG.......................................................... 43096_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 21
...............CTAGCAGCACGTAAATATTGaCGa......................................................... 21536_1_0_0_0_0_0 MATURE 1 0.55 1 2.33 0 0.00 20A2
................TAGCAGCACGTAAATATTaGCGg......................................................... 22476_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 18A3
..................GCAGCACGTAAATATTGGaGTAt....................................................... 17477_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 18A3
................TAGCAGCACGTAAATATTGGtGT......................................................... 12429_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 20T2
.................AGCAGCACGTAAATATTGcCG.......................................................... 10382_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 18C2
...................CAGCACGTAAATATTGGCGTAt....................................................... 32635_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 21
................TAGCAGCACGTAAATATaGGCGa......................................................... 18224_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 17A4
.................AGCAGCACGTAAATATTGGCt.......................................................... 42249_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 20
................TAGCAGCACGTAAATAaTGGCG.......................................................... 5234_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 16A5
................TAGCAGCACGTAAATATTG............................................................. 5935_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 19
................TAGCAGCACGTAAATATTGc............................................................ 38921_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 19
.................AGCAGCACGTAAATATTGaCGTAG....................................................... 11286_1_0_0_0_0_0 MATURE 1 0.55 1 2.33 0 0.00 18A5
..................GCAGCACGTAAATATTGGCGTAa....................................................... 43899_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 22
.................AGgAGCACGTAAATATTGGCG.......................................................... 39195_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 2G18
...............CTAGCAGCACGTAAATATTaGCc.......................................................... 2019_1_0_0_0_0_0 MATURE 1 0.55 1 2.33 0 0.00 19A2
................TAGCAGCACGTAAATATTGcCGT......................................................... 36669_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 19C3
.................AGCAGCACGTAAATATTGaCG.......................................................... 6132_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 18A2
.................AGCAGCACGTAAATATTGG............................................................ 11810_1_0_0_0_0_0 MATURE 1 0.55 1 2.33 0 0.00 19
................TAGCAGCACGTAAATATTaGCGc......................................................... 18028_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 18A3
...................CAGCACGTAAATATTGGtGTAt....................................................... 2797_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 17T3
................TAGCAGCACGTAAATATTGtCG.......................................................... 40227_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 19T2
.................AGCAGCACGTAAATATTGGCGTAt....................................................... 14213_1_0_0_0_0_0 MATURE 1 0.55 1 2.33 0 0.00 23
...............CTAGCAGCACGTAAATATTaGCG.......................................................... 32106_1_0_0_0_0_0 MATURE 1 0.55 1 2.33 0 0.00 19A3
...............CTAGCAGCACGTAAATATcGGa........................................................... 23228_1_0_0_0_0_0 MATURE 1 0.55 1 2.33 0 0.00 18C2
...............CTAGCAGCACGTAAATATTGcCGT......................................................... 32337_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 20C3
...............CTAGCAGCACGTAAATATTaGCGc......................................................... 28280_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 19A3
.................AGCAGCACGTAAATATTGGa........................................................... 20595_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 19
................TAGCAGCACGTAAATATTcGCa.......................................................... 13131_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.72 18C2
---------- ---------- ----------
181 43 138
(23.76) (76.24)
*** OTHER ***
_______________________________________________________________________________________________
CATGCTTGTTCCACTCTAGCAGCACGTAAATATTGGCGTAGTGAAATAAATATTAAACACCAATATTATTGTGCTGCTTTAGTGTGACAGGGATA REF 3 68813824 - 68813918
TAGCAGCACGTAAATATTGGCG MATURE 3 68813841 - 68813956 mmu-miR-16 +
_______________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................................................ACCAATATTATTGTGCTGCTTT................ 39595_22_0_0_0_0_15 OTHER 37 18.88 22 26.19 15 13.39 22
..........................................................ACCAATATTATTGTGCTGCTT................. 42333_5_0_0_0_0_12 OTHER 17 8.67 5 5.95 12 10.71 21
.......................................................AAgACCAATATTATTGTGCTGCTTT................ 1626_3_0_0_0_0_10 OTHER 13 6.63 3 3.57 10 8.93 2G22
..........................................................ACCAATATTATTGTGCTaCTT................. 41869_6_0_0_0_0_6 OTHER 12 6.12 6 7.14 6 5.36 17A3
..........................................................ACCAATATTATTGTGCTaCTTT................ 38947_9_0_0_0_0_3 OTHER 12 6.12 9 10.71 3 2.68 17A4
..........................................................ACCAATATTATTGTGCTGCTTTt............... 41484_3_0_0_0_0_8 OTHER 11 5.61 3 3.57 8 7.14 22
..........................................................ACCAATATTATTGTGCTGCaTT................ 43261_4_0_0_0_0_5 OTHER 9 4.59 4 4.76 5 4.46 19A2
...........................................................CCAATATTATTGTGCTGCTT................. 36012_3_0_0_0_0_5 OTHER 8 4.08 3 3.57 5 4.46 20
..........................................................ACCAATATTATTGTGCTGtTT................. 32096_1_0_0_0_0_3 OTHER 4 2.04 1 1.19 3 2.68 18T2
..........................................................ACCAATATTATTGTGCTGCaTTA............... 31561_0_0_0_0_0_3 OTHER 3 1.53 0 0.00 3 2.68 19A3
............................................................CAATATTATTGTGCTGCTTT................ 21493_1_0_0_0_0_2 OTHER 3 1.53 1 1.19 2 1.79 20
...........................................................CCAATATTATTGTGCTGCTTT................ 25726_2_0_0_0_0_1 OTHER 3 1.53 2 2.38 1 0.89 21
..........................................................ACCAATATTATTGTGCTGCcTT................ 36521_1_0_0_0_0_2 OTHER 3 1.53 1 1.19 2 1.79 19C2
..........................................................ACCAATATTATTGTGaTGCTT................. 25133_1_0_0_0_0_2 OTHER 3 1.53 1 1.19 2 1.79 15A5
...........................................................CCAATATTATTGTGCTGCTTTA............... 39915_1_0_0_0_0_2 OTHER 3 1.53 1 1.19 2 1.79 22
...........................................................CCAATATTATTGTGCTGCTTTAt.............. 23077_2_0_0_0_0_1 OTHER 3 1.53 2 2.38 1 0.89 22
..........................................................ACCAATATTATTGTGCTGCTTTA............... 41685_0_0_0_0_0_3 OTHER 3 1.53 0 0.00 3 2.68 23
..........................................................ACCAATATTATTGTGCaGCTTT................ 42747_2_0_0_0_0_1 OTHER 3 1.53 2 2.38 1 0.89 16A5
..........................................................ACCAATATTATTGTGCTGtTTT................ 22186_0_0_0_0_0_2 OTHER 2 1.02 0 0.00 2 1.79 18T3
..........................................................ACCAATATTATTGTGCTGaTTT................ 24687_1_0_0_0_0_1 OTHER 2 1.02 1 1.19 1 0.89 18A3
..........................................................ACCAATATTATTGTGCTGCTTa................ 14222_2_0_0_0_0_0 OTHER 2 1.02 2 2.38 0 0.00 21
..........................................................ACCAATATTATTGTGCTGCTa................. 8659_0_0_0_0_0_2 OTHER 2 1.02 0 0.00 2 1.79 20
..........................................................ACCAATATTATTGTGCTGCTTc................ 43922_1_0_0_0_0_1 OTHER 2 1.02 1 1.19 1 0.89 21
..........................................................ACCAATATTATTGTGCTGaTT................. 35683_1_0_0_0_0_1 OTHER 2 1.02 1 1.19 1 0.89 18A2
...........................................................CCAATATTATTGTGCTGCTcTA............... 9296_2_0_0_0_0_0 OTHER 2 1.02 2 2.38 0 0.00 19C2
..........................................................ACCAATATTATTGTGCgGCTTT................ 26913_1_0_0_0_0_0 OTHER 1 0.51 1 1.19 0 0.00 16G5
...........................................................CCAATATTATTGTGCTGCTcTAc.............. 33678_1_0_0_0_0_0 OTHER 1 0.51 1 1.19 0 0.00 19C2
.........................................................CACCAATATTATTGTGCTGCTTT................ 117_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 23
..........................................................ACCAATATTATTGTGCcGCTTa................ 33534_1_0_0_0_0_0 OTHER 1 0.51 1 1.19 0 0.00 16C4
......................................................AAACACCAATATTATTGaGCTa.................... 14600_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 17A3
..........................................................ACCAATATTATTGTGCTGCTTTAG.............. 27201_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 24
.............................................................AATATTATTGTGCTGCTTT................ 34211_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 19
............................................................CAATATTATTGTGCTGCTTTAa.............. 1632_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 21
...........................................................CCAATATTATTGTGCTGCaTTA............... 10613_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 18A3
...........................................................CCAATATTATTGTGCTcCTTTA............... 13062_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 16C5
..........................................................ACCAATATTATTGTGCTGCaTTt............... 7120_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 19A2
...........................................................CCAATATTATTGTGCTaCTTTA............... 35898_1_0_0_0_0_0 OTHER 1 0.51 1 1.19 0 0.00 16A5
..........................................................ACCAATATTATTGTGCTaCTTa................ 6766_1_0_0_0_0_0 OTHER 1 0.51 1 1.19 0 0.00 17A3
..........................................................ACCAATATTATTGTGCTGCTaTAG.............. 5052_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 20A3
..........................................................ACCAATATTATTGTGCTGCTTTAt.............. 12450_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 23
............................................................CAATATTATTGTGCTGCTT................. 36164_1_0_0_0_0_0 OTHER 1 0.51 1 1.19 0 0.00 19
..........................................................ACCAATATTATTGTGgTGCTTa................ 34219_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 15G5
...........................................................CCAATATTATTGTGCTGCTaTA............... 9463_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 19A2
..........................................................ACCAATATTATTGTGCTaCTTTt............... 34455_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 17A4
............................................................CAATATTATTGTGCTGCTcTAt.............. 1611_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 18C2
....................................CGgAGTGAAATAAATATTAAAC...................................... 27083_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 2G19
..........................................................ACCAATATTATTGTGCTGCTaTA............... 13063_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 20A2
...........................................................CCAATATTATTGTGCTGCTa................. 21502_1_0_0_0_0_0 OTHER 1 0.51 1 1.19 0 0.00 19
..........................................................ACCAATATTATTGTGCaGCTT................. 40117_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 16A4
..........................................................ACCAATATTATTGTGCTtCTTT................ 43994_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 17T4
..........................................................ACCAATATTATTGTGCTcCTT................. 41848_1_0_0_0_0_0 OTHER 1 0.51 1 1.19 0 0.00 17C3
..........................................................ACCAATATTATTGTGCTcCTTT................ 27037_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 17C4
...........................................................CCAATATTATTGcGCTGCTTT................ 24372_1_0_0_0_0_0 OTHER 1 0.51 1 1.19 0 0.00 12C8
..........................................................ACCAATATTATTGTGCTGCTTg................ 5553_1_0_0_0_0_0 OTHER 1 0.51 1 1.19 0 0.00 21
..........................................................ACCAATATTATTGTGCTGCT.................. 22652_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 20
..........................................................ACCAATATTATTGTGCcGCTTT................ 28696_0_0_0_0_0_1 OTHER 1 0.51 0 0.00 1 0.89 16C5
...........................................................CCAATATTATTGTGCTGCaTTAt.............. 22208_1_0_0_0_0_0 OTHER 1 0.51 1 1.19 0 0.00 18A3
---------- ---------- ----------
196 84 112
(42.86) (57.14)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 43 138 181 48.01%
OTHER 84 112 196 51.99%
---------- ---------- ----------
127 250 377
[END]