[BEGIN]
REFERENCE HAIRPIN
******************************************************************************************************************
ID : mmu-mir-16-1
DESCRIPTION : mmu-mir-16-1 MI0000565 Mus musculus miR-16-1 stem-loop
CHROMOSOME : 14
SPAN : 62250717 - 62250809
LENGTH : 93
SEQUENCE : ATGTCAGCGGTGCCTTAGCAGCACGTAAATATTGGCGTTAAGATTCTGAAATTACCTCCAGTATTGACTGTGCTGCTGAAGTAAGGTTGGCAA
OVERHANG THRESHOLD : 40%
******************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-16
ACCID : MI0000565
PARENT : mmu-mir-16-1
CHROMOSOME : 14
START : 62250717
STOP : 62250809
OFFSET : 16..37
SEQUENCE : TAGCAGCACGTAAATATTGGCG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-16*
ACCID : MI0000565
PARENT : mmu-mir-16-1
CHROMOSOME : 14
START : 62250717
STOP : 62250809
OFFSET : 58..79
SEQUENCE : CCAGTATTGACTGTGCTGCTGA
STRAND : -
******************************
*** MATURE ***
_____________________________________________________________________________________________
ATGTCAGCGGTGCCTTAGCAGCACGTAAATATTGGCGTTAAGATTCTGAAATTACCTCCAGTATTGACTGTGCTGCTGAAGTAAGGTTGGCAA REF 14 62250717 - 62250809
TAGCAGCACGTAAATATTGGCG MATURE 14 62250733 - 62250846 mmu-miR-16 -
CCAGTATTGACTGTGCTGCTGA MATURESTAR 14 62250775 - 62250888 mmu-miR-16* -
_____________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................CAGCACGTAAATATTGGCGTTA...................................................... 26641_1_0_0_0_0_1 MATURE 2 14.29 1 33.33 1 9.09 22
................AGCAGCACGTAAATATTGGCGTTAt..................................................... 21893_0_0_0_0_0_1 MATURE 1 7.14 0 0.00 1 9.09 24
...................AGCACGTAAATATTGGtGTTA...................................................... 36610_1_0_0_0_0_0 MATURE 1 7.14 1 33.33 0 0.00 16T4
..............TTAGCAGCACGTAAATATTGcCGa........................................................ 20455_1_0_0_0_0_0 MATURE 1 7.14 1 33.33 0 0.00 20C2
..................CAGCACGTAAATATTGGCGTTt...................................................... 21907_0_0_0_0_0_1 MATURE 1 7.14 0 0.00 1 9.09 21
..................CAGCACGTAAATATTGGCGTTAAt.................................................... 33862_0_0_0_0_0_1 MATURE 1 7.14 0 0.00 1 9.09 23
...............TAGCAGCACGTAAATATTGaCGTTA...................................................... 37750_0_0_0_0_0_1 MATURE 1 7.14 0 0.00 1 9.09 19A5
...................AGCAgGTAAATATTGGCGTTAc..................................................... 42287_0_0_0_0_0_1 MATURE 1 7.14 0 0.00 1 9.09 4G16
..............TTAGCAGCACGTAAATATTaGCt......................................................... 41130_0_0_0_0_0_1 MATURE 1 7.14 0 0.00 1 9.09 19A2
.................GCAGCACGTAAATATTGGCGTTt...................................................... 28440_0_0_0_0_0_1 MATURE 1 7.14 0 0.00 1 9.09 22
..................CAGCAgGTAAATATTGGCGTTAc..................................................... 14544_0_0_0_0_0_1 MATURE 1 7.14 0 0.00 1 9.09 5G16
...................AGCACGTAAATATTGGCGTTAt..................................................... 37492_0_0_0_0_0_1 MATURE 1 7.14 0 0.00 1 9.09 21
....................GCACGTAAATATTGGCGTT....................................................... 4752_0_0_0_0_0_1 MATURE 1 7.14 0 0.00 1 9.09 19
---------- ---------- ----------
14 3 11
(21.43) (78.57)
*** MATURESTAR ***
_____________________________________________________________________________________________
ATGTCAGCGGTGCCTTAGCAGCACGTAAATATTGGCGTTAAGATTCTGAAATTACCTCCAGTATTGACTGTGCTGCTGAAGTAAGGTTGGCAA REF 14 62250717 - 62250809
TAGCAGCACGTAAATATTGGCG MATURE 14 62250733 - 62250846 mmu-miR-16 -
CCAGTATTGACTGTGCTGCTGA MATURESTAR 14 62250775 - 62250888 mmu-miR-16* -
_____________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................................................CAGTATTGACTGTGCTGCTGAA.............. 36332_0_0_0_0_0_1 MATURESTAR 1 25.00 0 0.00 1 50.00 22
.......................................................CTCCAGTATTGACTGTGCTGCTt................ 17644_1_0_0_0_0_0 MATURESTAR 1 25.00 1 50.00 0 0.00 22
..........................................................CAGTATTGACTGTGCTaCTGAA.............. 31861_1_0_0_0_0_0 MATURESTAR 1 25.00 1 50.00 0 0.00 16A5
.........................................................CCAGTATTGACTGTGCTGCTGAA.............. 23200_0_0_0_0_0_1 MATURESTAR 1 25.00 0 0.00 1 50.00 23
---------- ---------- ----------
4 2 2
(50.00) (50.00)
*** OTHER ***
_____________________________________________________________________________________________
ATGTCAGCGGTGCCTTAGCAGCACGTAAATATTGGCGTTAAGATTCTGAAATTACCTCCAGTATTGACTGTGCTGCTGAAGTAAGGTTGGCAA REF 14 62250717 - 62250809
TAGCAGCACGTAAATATTGGCG MATURE 14 62250733 - 62250846 mmu-miR-16 -
CCAGTATTGACTGTGCTGCTGA MATURESTAR 14 62250775 - 62250888 mmu-miR-16* -
_____________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................................GGCGTTAAGATTCTGAAATTACCT..................................... 15801_7_0_0_0_0_14 OTHER 21 67.74 7 77.78 14 63.64 24
.................................GGCGTTAAGATTCTGAAATcACCT..................................... 30228_1_0_0_0_0_1 OTHER 2 6.45 1 11.11 1 4.55 19C4
.................................GGCGTTAAGATTCTGAAATTACCc..................................... 36557_1_0_0_0_0_1 OTHER 2 6.45 1 11.11 1 4.55 23
.................................GGCGTTAAGATTCTGAAATTACCg..................................... 38727_0_0_0_0_0_2 OTHER 2 6.45 0 0.00 2 9.09 23
..................................GCGTTAAGATTCTGAAATTACCT..................................... 43648_0_0_0_0_0_1 OTHER 1 3.23 0 0.00 1 4.55 23
.................................GGCGTTAAGATTCTGAAATaACCT..................................... 23457_0_0_0_0_0_1 OTHER 1 3.23 0 0.00 1 4.55 19A4
.................................GGCGTTAAGATTCTGAAAcTACCT..................................... 38185_0_0_0_0_0_1 OTHER 1 3.23 0 0.00 1 4.55 18C5
.................................GGCGTTAAGATTCTGAAATgACCT..................................... 31570_0_0_0_0_0_1 OTHER 1 3.23 0 0.00 1 4.55 19G4
---------- ---------- ----------
31 9 22
(29.03) (70.97)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 3 11 14 28.57%
MATURESTAR 2 2 4 8.16%
OTHER 9 22 31 63.27%
---------- ---------- ----------
14 35 49
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