[BEGIN]

REFERENCE HAIRPIN
*********************************************************************************************************
ID                 : mmu-mir-15a
DESCRIPTION        : mmu-mir-15a MI0000564 Mus musculus miR-15a stem-loop
CHROMOSOME         : 14
SPAN               : 62250864 - 62250947
LENGTH             : 84
SEQUENCE           : CCCTTGGAGTAAAGTAGCAGCACATAATGGTTTGTGGATGTTGAAAAGGTGCAGGCCATACTGTGCTGCCTCAAAATACAAGGA
OVERHANG THRESHOLD : 40%
*********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-15a
ACCID      : MI0000564
PARENT     : mmu-mir-15a
CHROMOSOME : 14
START      : 62250864
STOP       : 62250947
OFFSET     : 15..36
SEQUENCE   : TAGCAGCACATAATGGTTTGTG
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-15a*
ACCID      : MI0000564
PARENT     : mmu-mir-15a
CHROMOSOME : 14
START      : 62250864
STOP       : 62250947
OFFSET     : 52..73
SEQUENCE   : CAGGCCATACTGTGCTGCCTCA
STRAND     : -
******************************



*** MATURE ***
____________________________________________________________________________________
CCCTTGGAGTAAAGTAGCAGCACATAATGGTTTGTGGATGTTGAAAAGGTGCAGGCCATACTGTGCTGCCTCAAAATACAAGGA REF                  14                   62250864 - 62250947  
              TAGCAGCACATAATGGTTTGTG                                                 MATURE               14                   62250879 - 62250983  mmu-miR-15a          -                    
                                                   CAGGCCATACTGTGCTGCCTCA            MATURESTAR           14                   62250916 - 62251020  mmu-miR-15a*         -                    
____________________________________________________________________________________

                                                                                -SEQ-               -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..........AAtGTAGCAGCACATAATGGTTTGT..................................................   36212_0_0_0_0_0_40       MATURE           40        38.10            0         0.00           40        51.95                      2T22   
.............GTAGCAGCACATAATGGTTTGTG.................................................    36646_5_0_0_0_0_5       MATURE           10         9.52            5        17.86            5         6.49                        23   
.............GTAGCAGCACATAATGGTTTGTGt................................................    39215_4_0_0_0_0_1       MATURE            5         4.76            4        14.29            1         1.30                        23   
...............AGCAGCACATAATGGTTTGT..................................................    24820_0_0_0_0_0_4       MATURE            4         3.81            0         0.00            4         5.19                        20   
.............GTAGCAGCACATAATGGaTTGTG.................................................    12888_0_0_0_0_0_3       MATURE            3         2.86            0         0.00            3         3.90                      17A5   
.............GTgGCAGCACATAATGGTTTGTG.................................................    41809_1_0_0_0_0_2       MATURE            3         2.86            1         3.57            2         2.60                      2G20   
.............GTAGCAGCACATAATGGTaTGT..................................................    29731_1_0_0_0_0_1       MATURE            2         1.90            1         3.57            1         1.30                      18A3   
............AGTAGCAGCACATAATGGTTaGTG.................................................    23229_2_0_0_0_0_0       MATURE            2         1.90            2         7.14            0         0.00                      20A3   
.............GTAGCAGCACATAATGaTTTGT..................................................    22248_1_0_0_0_0_1       MATURE            2         1.90            1         3.57            1         1.30                      16A5   
............AGTgGCAGCACATAATGGTTTGTG.................................................    37392_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                      3G20   
.................CAGCcCATAATGGTTTGTGGAa..............................................     9802_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      4C16   
.............GTAGCAGCACATAATGGTTTGTa.................................................    34179_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                        22   
............AGTAGCAGCACATAATGGTTaGTGa................................................     7499_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      20A3   
.............GTAcCAGCACATAATGGTTTGTGt................................................    36422_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                      3C19   
..............TAGCAGCACATAATGGTaTGT..................................................     8951_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      17A3   
..........AAgGTAGCAGCACATAATGGTTTGT..................................................    35215_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      2G22   
.................CAGCACATAATGGTTTGTG.................................................     1354_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                        19   
..........AAtGTAGCAGCACATAATGGTTT....................................................    35190_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      2T20   
.............GTAGCAGCACATAATGGTTTaTG.................................................    37033_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      20A2   
.............GTAGCAGCACATAATGGTcTGTGc................................................    14398_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      18C4   
..........AAAGTAGCAGCACATAATGGTTaGT..................................................    15340_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                      22A2   
............AGTAGCAGCACATAATGaTTTGT..................................................    37901_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                      17A5   
...............AGCAGCACATAATGGTTTGTGt................................................    29973_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                        21   
...........AAtTAGCAGCACATAATGGTTTGTa.................................................    15392_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                      2T21   
.............GTAGCAGCACATAATGtTTTGT..................................................     2360_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      16T5   
............AGTAGCAGCACATAATGGTTaGTGG................................................    10947_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                      20A4   
...............AGCAGCACATAATGGTTTGTGtAT..............................................    16811_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                      21T2   
...........AAGTAGCAGCACATAATGGTTTGTG.................................................    22484_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                        25   
.............GTAGCAGCACATAATGGTTTGT..................................................    24719_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                        22   
................GCAGCACATAATGGTTTGTt.................................................    41448_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                        19   
.................CAGgACATAATGGTTTGTGGAa..............................................    13688_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      3G17   
.............GTAGtAGCACATAATGGTTTGTG.................................................    42250_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                      4T18   
............AGTAGCAGCACATAATGGTTaGTt.................................................    22170_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      20A2   
...............AGCAGCACATAATGGTTTaTG.................................................    29304_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      18A2   
................GCAGCACATAATGGTTTaTGGA...............................................     6714_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                      17A4   
...............AGCAGCACATAATGGTTTGTG.................................................      478_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                        21   
.............GTAGCAGCACATAATGGTcTGTG.................................................    13943_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      18C4   
.............GTAGCAGCACATAATGGcTTGT..................................................    40303_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      17C4   
...............AGCAGCACATAATGGTTgGTGGA...............................................    30030_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      17G5   
.............GTAGCAGCcCATAATGGTTTGTa.................................................    39227_1_0_0_0_0_0       MATURE            1         0.95            1         3.57            0         0.00                      8C13   
..........AAtGTAGCAGCACATAATGGTTTGc..................................................    31280_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      2T21   
.............GTAGCAGCACATAATGGcTTGTG.................................................    26869_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      17C5   
.............GTAGCAGCACATAATGGTgTGTa.................................................     9206_0_0_0_0_0_1       MATURE            1         0.95            0         0.00            1         1.30                      18G3   
                                                                                                                          ----------                ----------                ----------   
                                                                                                                                 105                        28                        77                                          
                                                                                                                                                       (26.67)                   (73.33)                                       




*** MATURESTAR ***
____________________________________________________________________________________
CCCTTGGAGTAAAGTAGCAGCACATAATGGTTTGTGGATGTTGAAAAGGTGCAGGCCATACTGTGCTGCCTCAAAATACAAGGA REF                  14                   62250864 - 62250947  
              TAGCAGCACATAATGGTTTGTG                                                 MATURE               14                   62250879 - 62250983  mmu-miR-15a          -                    
                                                   CAGGCCATACTGTGCTGCCTCA            MATURESTAR           14                   62250916 - 62251020  mmu-miR-15a*         -                    
____________________________________________________________________________________

                                                                                -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................................................CAGGCtATACTGTGCTGCCTCAAAt.........        662_0_0_0_0_0_1   MATURESTAR            1        14.29            0         0.00            1        20.00                      5T18   
...................................................CAGGtCATACTGTGCTGCCTCAA...........      14484_0_0_0_0_0_1   MATURESTAR            1        14.29            0         0.00            1        20.00                      4T18   
...................................................CAGGtCATACTGTGCTGCCTCAt...........      33018_0_0_0_0_0_1   MATURESTAR            1        14.29            0         0.00            1        20.00                      4T17   
....................................................AGGCCATACTGTGCTGCCTCcAA..........      19435_0_0_0_0_0_1   MATURESTAR            1        14.29            0         0.00            1        20.00                      20C2   
....................................................AGGCCATACTGTGCTGCCTCAAt..........      37986_0_0_0_0_0_1   MATURESTAR            1        14.29            0         0.00            1        20.00                        22   
...................................................CAGGCCATACTGTGCTGCCcCAAAt.........      30904_1_0_0_0_0_0   MATURESTAR            1        14.29            1        50.00            0         0.00                      19C4   
...................................................CAGGCCATACTGTGCTGCCTCAAAt.........       5369_1_0_0_0_0_0   MATURESTAR            1        14.29            1        50.00            0         0.00                        24   
                                                                                                                            ----------                ----------                ----------   
                                                                                                                                     7                         2                         5                                          
                                                                                                                                                         (28.57)                   (71.43)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              28              77             105          93.75%
     MATURESTAR               2               5               7           6.25%
                     ----------      ----------      ----------                
                             30              82             112                



[END]
