[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************************
ID : mmu-mir-15a
DESCRIPTION : mmu-mir-15a MI0000564 Mus musculus miR-15a stem-loop
CHROMOSOME : 14
SPAN : 62250864 - 62250947
LENGTH : 84
SEQUENCE : CCCTTGGAGTAAAGTAGCAGCACATAATGGTTTGTGGATGTTGAAAAGGTGCAGGCCATACTGTGCTGCCTCAAAATACAAGGA
OVERHANG THRESHOLD : 40%
*********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-15a
ACCID : MI0000564
PARENT : mmu-mir-15a
CHROMOSOME : 14
START : 62250864
STOP : 62250947
OFFSET : 15..36
SEQUENCE : TAGCAGCACATAATGGTTTGTG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-15a*
ACCID : MI0000564
PARENT : mmu-mir-15a
CHROMOSOME : 14
START : 62250864
STOP : 62250947
OFFSET : 52..73
SEQUENCE : CAGGCCATACTGTGCTGCCTCA
STRAND : -
******************************
*** MATURE ***
____________________________________________________________________________________
CCCTTGGAGTAAAGTAGCAGCACATAATGGTTTGTGGATGTTGAAAAGGTGCAGGCCATACTGTGCTGCCTCAAAATACAAGGA REF 14 62250864 - 62250947
TAGCAGCACATAATGGTTTGTG MATURE 14 62250879 - 62250983 mmu-miR-15a -
CAGGCCATACTGTGCTGCCTCA MATURESTAR 14 62250916 - 62251020 mmu-miR-15a* -
____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........AAtGTAGCAGCACATAATGGTTTGT.................................................. 36212_0_0_0_0_0_40 MATURE 40 38.10 0 0.00 40 51.95 2T22
.............GTAGCAGCACATAATGGTTTGTG................................................. 36646_5_0_0_0_0_5 MATURE 10 9.52 5 17.86 5 6.49 23
.............GTAGCAGCACATAATGGTTTGTGt................................................ 39215_4_0_0_0_0_1 MATURE 5 4.76 4 14.29 1 1.30 23
...............AGCAGCACATAATGGTTTGT.................................................. 24820_0_0_0_0_0_4 MATURE 4 3.81 0 0.00 4 5.19 20
.............GTAGCAGCACATAATGGaTTGTG................................................. 12888_0_0_0_0_0_3 MATURE 3 2.86 0 0.00 3 3.90 17A5
.............GTgGCAGCACATAATGGTTTGTG................................................. 41809_1_0_0_0_0_2 MATURE 3 2.86 1 3.57 2 2.60 2G20
.............GTAGCAGCACATAATGGTaTGT.................................................. 29731_1_0_0_0_0_1 MATURE 2 1.90 1 3.57 1 1.30 18A3
............AGTAGCAGCACATAATGGTTaGTG................................................. 23229_2_0_0_0_0_0 MATURE 2 1.90 2 7.14 0 0.00 20A3
.............GTAGCAGCACATAATGaTTTGT.................................................. 22248_1_0_0_0_0_1 MATURE 2 1.90 1 3.57 1 1.30 16A5
............AGTgGCAGCACATAATGGTTTGTG................................................. 37392_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 3G20
.................CAGCcCATAATGGTTTGTGGAa.............................................. 9802_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 4C16
.............GTAGCAGCACATAATGGTTTGTa................................................. 34179_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 22
............AGTAGCAGCACATAATGGTTaGTGa................................................ 7499_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 20A3
.............GTAcCAGCACATAATGGTTTGTGt................................................ 36422_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 3C19
..............TAGCAGCACATAATGGTaTGT.................................................. 8951_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 17A3
..........AAgGTAGCAGCACATAATGGTTTGT.................................................. 35215_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 2G22
.................CAGCACATAATGGTTTGTG................................................. 1354_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 19
..........AAtGTAGCAGCACATAATGGTTT.................................................... 35190_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 2T20
.............GTAGCAGCACATAATGGTTTaTG................................................. 37033_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 20A2
.............GTAGCAGCACATAATGGTcTGTGc................................................ 14398_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 18C4
..........AAAGTAGCAGCACATAATGGTTaGT.................................................. 15340_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 22A2
............AGTAGCAGCACATAATGaTTTGT.................................................. 37901_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 17A5
...............AGCAGCACATAATGGTTTGTGt................................................ 29973_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 21
...........AAtTAGCAGCACATAATGGTTTGTa................................................. 15392_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 2T21
.............GTAGCAGCACATAATGtTTTGT.................................................. 2360_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 16T5
............AGTAGCAGCACATAATGGTTaGTGG................................................ 10947_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 20A4
...............AGCAGCACATAATGGTTTGTGtAT.............................................. 16811_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 21T2
...........AAGTAGCAGCACATAATGGTTTGTG................................................. 22484_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 25
.............GTAGCAGCACATAATGGTTTGT.................................................. 24719_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 22
................GCAGCACATAATGGTTTGTt................................................. 41448_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 19
.................CAGgACATAATGGTTTGTGGAa.............................................. 13688_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 3G17
.............GTAGtAGCACATAATGGTTTGTG................................................. 42250_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 4T18
............AGTAGCAGCACATAATGGTTaGTt................................................. 22170_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 20A2
...............AGCAGCACATAATGGTTTaTG................................................. 29304_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 18A2
................GCAGCACATAATGGTTTaTGGA............................................... 6714_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 17A4
...............AGCAGCACATAATGGTTTGTG................................................. 478_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 21
.............GTAGCAGCACATAATGGTcTGTG................................................. 13943_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 18C4
.............GTAGCAGCACATAATGGcTTGT.................................................. 40303_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 17C4
...............AGCAGCACATAATGGTTgGTGGA............................................... 30030_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 17G5
.............GTAGCAGCcCATAATGGTTTGTa................................................. 39227_1_0_0_0_0_0 MATURE 1 0.95 1 3.57 0 0.00 8C13
..........AAtGTAGCAGCACATAATGGTTTGc.................................................. 31280_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 2T21
.............GTAGCAGCACATAATGGcTTGTG................................................. 26869_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 17C5
.............GTAGCAGCACATAATGGTgTGTa................................................. 9206_0_0_0_0_0_1 MATURE 1 0.95 0 0.00 1 1.30 18G3
---------- ---------- ----------
105 28 77
(26.67) (73.33)
*** MATURESTAR ***
____________________________________________________________________________________
CCCTTGGAGTAAAGTAGCAGCACATAATGGTTTGTGGATGTTGAAAAGGTGCAGGCCATACTGTGCTGCCTCAAAATACAAGGA REF 14 62250864 - 62250947
TAGCAGCACATAATGGTTTGTG MATURE 14 62250879 - 62250983 mmu-miR-15a -
CAGGCCATACTGTGCTGCCTCA MATURESTAR 14 62250916 - 62251020 mmu-miR-15a* -
____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...................................................CAGGCtATACTGTGCTGCCTCAAAt......... 662_0_0_0_0_0_1 MATURESTAR 1 14.29 0 0.00 1 20.00 5T18
...................................................CAGGtCATACTGTGCTGCCTCAA........... 14484_0_0_0_0_0_1 MATURESTAR 1 14.29 0 0.00 1 20.00 4T18
...................................................CAGGtCATACTGTGCTGCCTCAt........... 33018_0_0_0_0_0_1 MATURESTAR 1 14.29 0 0.00 1 20.00 4T17
....................................................AGGCCATACTGTGCTGCCTCcAA.......... 19435_0_0_0_0_0_1 MATURESTAR 1 14.29 0 0.00 1 20.00 20C2
....................................................AGGCCATACTGTGCTGCCTCAAt.......... 37986_0_0_0_0_0_1 MATURESTAR 1 14.29 0 0.00 1 20.00 22
...................................................CAGGCCATACTGTGCTGCCcCAAAt......... 30904_1_0_0_0_0_0 MATURESTAR 1 14.29 1 50.00 0 0.00 19C4
...................................................CAGGCCATACTGTGCTGCCTCAAAt......... 5369_1_0_0_0_0_0 MATURESTAR 1 14.29 1 50.00 0 0.00 24
---------- ---------- ----------
7 2 5
(28.57) (71.43)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 28 77 105 93.75%
MATURESTAR 2 5 7 6.25%
---------- ---------- ----------
30 82 112
[END]