[BEGIN]
REFERENCE HAIRPIN
**************************************************************************************
ID : mmu-mir-155
DESCRIPTION : mmu-mir-155 MI0000177 Mus musculus miR-155 stem-loop
CHROMOSOME : 16
SPAN : 84714385 - 84714449
LENGTH : 65
SEQUENCE : CTGTTAATGCTAATTGTGATAGGGGTTTTGGCCTCTGACTGACTCCTACCTGTTAGCATTAACAG
OVERHANG THRESHOLD : 40%
**************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-155
ACCID : MI0000177
PARENT : mmu-mir-155
CHROMOSOME : 16
START : 84714385
STOP : 84714449
OFFSET : 4..26
SEQUENCE : TTAATGCTAATTGTGATAGGGGT
STRAND : +
******************************
*** MATURE ***
_________________________________________________________________
CTGTTAATGCTAATTGTGATAGGGGTTTTGGCCTCTGACTGACTCCTACCTGTTAGCATTAACAG REF 16 84714385 - 84714449
TTAATGCTAATTGTGATAGGGGT MATURE 16 84714389 - 84714475 mmu-miR-155 +
_________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..GTTAATGCTAATTGTGATAGaGGTT....................................... 34756_9_0_0_0_0_14 MATURE 23 5.60 9 11.54 14 4.20 20A4
...TTAATGCTAATTGTGATAGGGGTTT...................................... 33269_3_0_0_0_0_20 MATURE 23 5.60 3 3.85 20 6.01 25
...TTAATGCTAATTGTGATAGGGaTTT...................................... 60_3_0_0_0_0_20 MATURE 23 5.60 3 3.85 20 6.01 21A3
...TTAATGCTAATTGTGATAGGaGTTT...................................... 27620_5_0_0_0_0_16 MATURE 21 5.11 5 6.41 16 4.80 20A4
..GTTAATGCTAATTGTGATAaGGGTT....................................... 19959_1_0_0_0_0_20 MATURE 21 5.11 1 1.28 20 6.01 19A5
...TTAATGCTAATTGTGATAGaGGTTT...................................... 6751_5_0_0_0_0_15 MATURE 20 4.87 5 6.41 15 4.50 19A5
.TGTTAATGCTAATTGTGATAGG........................................... 43598_2_0_0_0_0_12 MATURE 14 3.41 2 2.56 12 3.60 22
..GTTAATGCTAATTGTGATAGGGaTT....................................... 27222_3_0_0_0_0_8 MATURE 11 2.68 3 3.85 8 2.40 22A2
....TAATGCTAATTGTGATAGGGGTaTT..................................... 23477_2_0_0_0_0_7 MATURE 9 2.19 2 2.56 7 2.10 22A2
..GTTAATGCTAATTGTGATAGGGGTT....................................... 25600_2_0_0_0_0_7 MATURE 9 2.19 2 2.56 7 2.10 25
...TTAATGCTAATTGTGATAGGGaTTa...................................... 1772_1_0_0_0_0_8 MATURE 9 2.19 1 1.28 8 2.40 21A2
..GTTAATGCTAATTGTGATAGG........................................... 22829_3_0_0_0_0_5 MATURE 8 1.95 3 3.85 5 1.50 21
...TTAATGCTAATTGTGATAGtGGTTT...................................... 15403_2_0_0_0_0_6 MATURE 8 1.95 2 2.56 6 1.80 19T5
....TAATGCTAATTGTGATAGGaGTTT...................................... 42311_2_0_0_0_0_6 MATURE 8 1.95 2 2.56 6 1.80 19A4
.TGTTAATGCTAATTGTGATAGaGG......................................... 982_0_0_0_0_0_8 MATURE 8 1.95 0 0.00 8 2.40 21A2
..GTTAATGCTAATTGTGATAGaGG......................................... 23188_3_0_0_0_0_4 MATURE 7 1.70 3 3.85 4 1.20 20A2
..GTTAATGCTAATTGTGAaAGG........................................... 35928_0_0_0_0_0_6 MATURE 6 1.46 0 0.00 6 1.80 17A3
....TAATGCTAATTGTGATAGGGaTTT...................................... 34430_0_0_0_0_0_6 MATURE 6 1.46 0 0.00 6 1.80 20A3
..GTTAATGCTAATTGTGATAGaGGT........................................ 41368_2_0_0_0_0_3 MATURE 5 1.22 2 2.56 3 0.90 20A3
...TTAATGCTAATTGTGATAGGGGTTa...................................... 20811_0_0_0_0_0_5 MATURE 5 1.22 0 0.00 5 1.50 24
..GTTAATGCTAATTGTGATAcGGGTT....................................... 8905_0_0_0_0_0_5 MATURE 5 1.22 0 0.00 5 1.50 19C5
.TGTTAATGCTAATTGTGATAaGGGT........................................ 4529_0_0_0_0_0_4 MATURE 4 0.97 0 0.00 4 1.20 20A4
.....AATGCTAATTGTGATAGGGGTTTTt.................................... 43969_1_0_0_0_0_3 MATURE 4 0.97 1 1.28 3 0.90 24
...TTAATGCTAATTGTGATAGGaGTTa...................................... 32788_0_0_0_0_0_4 MATURE 4 0.97 0 0.00 4 1.20 20A3
.TGTTAATGCTAATTGTGATAtGGG......................................... 12134_0_0_0_0_0_3 MATURE 3 0.73 0 0.00 3 0.90 20T3
...TTAATGCTAATTGTGATAGaGGTTa...................................... 3039_1_0_0_0_0_2 MATURE 3 0.73 1 1.28 2 0.60 19A4
...TTAATGCTAATTGTGATAGGGcTTT...................................... 18546_1_0_0_0_0_2 MATURE 3 0.73 1 1.28 2 0.60 21C3
.TGTTAATGCTAATTGTGATAGtGGT........................................ 36445_1_0_0_0_0_2 MATURE 3 0.73 1 1.28 2 0.60 21T3
..GTTAATGCTAATTGTGATAGaGGTa....................................... 6487_0_0_0_0_0_3 MATURE 3 0.73 0 0.00 3 0.90 20A3
..GTTAATGCTAATTGTGATAGGaGT........................................ 42865_0_0_0_0_0_3 MATURE 3 0.73 0 0.00 3 0.90 21A2
..GTTAATGCTAATTGTGATAaGGGT........................................ 11568_0_0_0_0_0_3 MATURE 3 0.73 0 0.00 3 0.90 19A4
....TAATGCTAATTGTGATAGaGGTTT...................................... 38810_1_0_0_0_0_2 MATURE 3 0.73 1 1.28 2 0.60 18A5
.TGTTAATGCTAATTGTGATAGaGGT........................................ 17406_1_0_0_0_0_2 MATURE 3 0.73 1 1.28 2 0.60 21A3
..GTTAATGCTAATTGTGATAGGaGTT....................................... 27851_1_0_0_0_0_2 MATURE 3 0.73 1 1.28 2 0.60 21A3
.TGTTAATGCTAATTGTaATAGG........................................... 30416_0_0_0_0_0_3 MATURE 3 0.73 0 0.00 3 0.90 16A5
.TGTTAATGCTAATTGTGAaAGG........................................... 38814_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 18A3
....TAATGCTAATTGTGATAGGtGTTT...................................... 23213_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 19T4
....TAATGCTAATTGTGATAGGtGTTTT..................................... 29835_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 19T5
..GTTAATGCTAATTGTGATAGGGcTT....................................... 9403_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 22C2
..GTTAATGCTAATTGTGATAG............................................ 34546_1_0_0_0_0_1 MATURE 2 0.49 1 1.28 1 0.30 20
..GTTAATGCTAATTGTGATAGaGGg........................................ 31887_1_0_0_0_0_1 MATURE 2 0.49 1 1.28 1 0.30 20A2
....TAATGCTAATTGTGATAGGGaTTTT..................................... 20935_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 20A4
..GTTAATGCTAATTGTGAaAGGGG......................................... 35362_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 17A5
..GTTAATGCTAATTGTGATAaGGt......................................... 33772_1_0_0_0_0_1 MATURE 2 0.49 1 1.28 1 0.30 19A2
....TAATGCTAATTGTGATAGGGGTTTa..................................... 15157_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 24
..GTTAATGCTAATTGTGATAaGGG......................................... 13419_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 19A3
...TTAATGCTAATTGTGATAGGtGTTa...................................... 1373_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 20T3
.TGTTAATGCTAATTGTGATgGG........................................... 38692_1_0_0_0_0_1 MATURE 2 0.49 1 1.28 1 0.30 19G2
..GTTAATGCTAATTGTGATAGGGGTa....................................... 4954_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 24
..GTTAATGCTAATTGTaATAGG........................................... 43405_1_0_0_0_0_1 MATURE 2 0.49 1 1.28 1 0.30 15A5
.TGTTAATGCTAATTGTGATAGGG.......................................... 23139_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 23
....TAATGCTAATTGTGATAGGaGTTa...................................... 38364_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 19A3
..GTTAATGCTAATTGTGATAcGG.......................................... 43931_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 19C2
..GTTAATGCTAATTGTGATAaGG.......................................... 44233_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 19A2
..GTTAATGCTAATTGTGATAGcGGT........................................ 11060_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 20C3
..GTTAATGCTAATTGTGATAGaGGa........................................ 23782_2_0_0_0_0_0 MATURE 2 0.49 2 2.56 0 0.00 20A2
.TGTTAATGCTAATTGTGATAGt........................................... 43317_2_0_0_0_0_0 MATURE 2 0.49 2 2.56 0 0.00 21
..GTTAATGCTAATTGTGtTAGG........................................... 22771_0_0_0_0_0_2 MATURE 2 0.49 0 0.00 2 0.60 16T4
.TGTTAATGCTAATTGTGATAcGGG......................................... 8877_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20C3
.TGTTAATGCTAATTGTGATAGaGGc........................................ 39422_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 21A2
.TGTTAATGCTAATTGTGATAGaGGg........................................ 24709_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 21A2
.TGTTAATGCTAATTGTGATAcGGGT........................................ 20425_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20C4
.TGTTAATGCTAATTGTGATAGGGa......................................... 15057_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 23
..GTTAATGCTAATTGTGATAc............................................ 31042_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 19
.TGTTAATGCTAATTGTGATAaGGGa........................................ 39186_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20A3
..GTTAATGCTAATTGTGAaAGGGa......................................... 32608_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 17A4
..GTTAATGCTAATTGTGAaAGGG.......................................... 41978_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 17A4
..GTTAATGCTAATTGTGATAGtGGT........................................ 3609_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20T3
..GTTAATGCTAATTGTGAgAGGGG......................................... 32159_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 17G5
.....AATGCTAATTGTGATAGGGGTcTTt.................................... 21245_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 21C2
.TGTTAATGCTAATTGTGAgAGGGG......................................... 32837_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 18G5
....TAATGCTAATTGTGATAGGGaTTa...................................... 20352_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20A2
..GTTAATGCTAATTGTGcTAGGt.......................................... 18323_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 16C4
....TAATGCTAATTGTGATAGGcGTTTT..................................... 21773_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 19C5
....TAATGCTAATTGTGATAGGGcTTTT..................................... 13251_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20C4
..GTTAATGCTAATTGTGATAGGaGTc....................................... 1178_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 21A2
....TAATGCTAATTGTGATAGGGcTTT...................................... 16480_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20C3
..GTTAATGCTAATTGTGAgAGGGc......................................... 19292_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 17G4
....TAATGCTAATTGTGATAGGaGTTTT..................................... 42107_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 19A5
.TGTTAgTGCTAATTGTGATAGGG.......................................... 35496_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 5G17
...TTAATGCTAATTGTGATAGGGGaTT...................................... 9792_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 22A2
...TTAATGCTAATTGTGATAaGGGT........................................ 3456_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 18A4
....TAATGCTAATTGTGATAGGGGTTT...................................... 16602_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 24
..GTTAATGCTAATTGTGATAGtGGTT....................................... 31740_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20T4
..GTTAATGCTAATTGTGAaAGGGc......................................... 3559_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 17A4
....TAATGCTAATTGTGATAGGGG......................................... 16673_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 21
....TAATGCTAATTGTGATAGGcGTTT...................................... 4195_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 19C4
....TAATGCTAATTGTGATAGGaGT........................................ 15151_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 19A2
..GTTAATGCTAATTGTGATAGtGGTa....................................... 26885_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20T3
..GTTAATGCTAATTGTGATAaGGa......................................... 34429_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 19A2
...TTAATGCTAATTGTGATAGGcGTTa...................................... 15277_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20C3
....TAATGCTAATTGTGATAGGGaTTc...................................... 36777_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20A2
..GTTAATGCTAATTGTGATAGGtGT........................................ 6429_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 21T2
..GTTAATGCTAATTGTGATAGcGGTT....................................... 30533_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20C4
....TAATGCTAATTGTGATAGGGGTTa...................................... 43290_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 23
...TTAATGCTAATTGTGATAGGGaTTg...................................... 13184_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 21A2
..GTTAATGCTAATTGTGATAGcGG......................................... 18454_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 20C2
.....AATGCTAATTGTGATAGGGGcTTTa.................................... 20217_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20C3
..GTTAATGCTAATTGTGATtGGGGT........................................ 1157_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 18T5
.TGTTAATGCTAATTGTGAaAGGGG......................................... 2839_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 18A5
.TGTTAATGCTAATTGTGATAaGGGg........................................ 40802_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 20A3
....TAATGCTAATTGTGATAGaGGT........................................ 26699_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 18A3
...TTAATGCTAATTGTGATAGaGGTTc...................................... 20665_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 19A4
...TTAATGCTAATTGTGATAGcGGTTa...................................... 29339_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 19C4
.TGTTAATGCTAATTGTGcTAGGt.......................................... 22688_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 17C4
.TGTTAATGCTAATTGTGATAGcGGg........................................ 294_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 21C2
...TTAATGCTAATTGTGATAGGGaTTc...................................... 28382_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 21A2
..GTTAATGCTAATTGTGATAGcGGa........................................ 37732_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 20C2
.TGTTAATGCTAATTGTGAgAGGG.......................................... 4450_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 18G4
..GTTAATGCTAATTGTGATcGG........................................... 24174_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 18C2
....TAATGCTAATTGTGATAGaGGTTc...................................... 38085_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 18A4
..GTTAATGCTAATTGTGATAGGGG......................................... 40456_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 23
.TGTTAATGCTAATTGTGtTAGt........................................... 36603_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 17T3
...TTAATGCTAATTGTGATAcGGGT........................................ 19493_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 18C4
......ATGCTAATTGTGATAGGGGTaTT..................................... 32896_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 20A2
.TGTTAATGCTAATTGTGAaAGt........................................... 40730_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 18A2
..GTTAATGCTAATTGTGATAGGaGTa....................................... 31617_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 21A2
..GTTAATGCTAATTGTGATA............................................. 32316_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 19
.TGTTAATGCTAATTGTGcTAGGa.......................................... 21410_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 17C4
..GTTAATGCTAATTGTGATAGGtGTa....................................... 32825_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 21T2
....TAATGCTAATTGTGATAGGGGTcTT..................................... 31723_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 22C2
..GTTAATGCTAATTGTGATAGGGa......................................... 32794_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 22
.TGTTAATGCTAATTGTGATAGcGGT........................................ 27728_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 21C3
...TTAATGCTAATTGTGATAGa........................................... 16755_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 19
.....AATGCTAATTGTGATAGGGGTaTTt.................................... 41176_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 21A2
....TAATGCTAATTGTGATAGcGGTTT...................................... 775_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 18C5
.TGTTAATGCTAATTGTGAaAGGGc......................................... 39439_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 18A4
.TGTTAATGCTAATTGTaATAGa........................................... 2653_1_0_0_0_0_0 MATURE 1 0.24 1 1.28 0 0.00 16A4
...TTAATGCTAATTGTGATAGaGGc........................................ 6884_0_0_0_0_0_1 MATURE 1 0.24 0 0.00 1 0.30 19A2
---------- ---------- ----------
411 78 333
(18.98) (81.02)
*** OTHER ***
_________________________________________________________________
CTGTTAATGCTAATTGTGATAGGGGTTTTGGCCTCTGACTGACTCCTACCTGTTAGCATTAACAG REF 16 84714385 - 84714449
TTAATGCTAATTGTGATAGGGGT MATURE 16 84714389 - 84714475 mmu-miR-155 +
_________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................................CTCCTACCTGTTAGCATTA..... 4917_1_0_0_0_0_0 OTHER 1 50.00 1 50.00 0 0 19
..........................................CTCCTACCTGTTAGCATTAACA.. 4649_1_0_0_0_0_0 OTHER 1 50.00 1 50.00 0 0 22
---------- ---------- ----------
2 2 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 78 333 411 99.52%
OTHER 2 0 2 0.48%
---------- ---------- ----------
80 333 413
[END]