[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************
ID                 : mmu-mir-152
DESCRIPTION        : mmu-mir-152 MI0000174 Mus musculus miR-152 stem-loop
CHROMOSOME         : 11
SPAN               : 96711707 - 96711779
LENGTH             : 73
SEQUENCE           : CCGGGCCTAGGTTCTGTGATACACTCCGACTCGGGCTCTGGAGCAGTCAGTGCATGACAGAACTTGGGCCCGG
OVERHANG THRESHOLD : 40%
**********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-152
ACCID      : MI0000174
PARENT     : mmu-mir-152
CHROMOSOME : 11
START      : 96711707
STOP       : 96711779
OFFSET     : 47..67
SEQUENCE   : TCAGTGCATGACAGAACTTGG
STRAND     : +
******************************



*** MATURE ***
_________________________________________________________________________
CCGGGCCTAGGTTCTGTGATACACTCCGACTCGGGCTCTGGAGCAGTCAGTGCATGACAGAACTTGGGCCCGG REF                  11                   96711707 - 96711779  
                                              TCAGTGCATGACAGAACTTGG       MATURE               11                   96711754 - 96711846  mmu-miR-152          +                    
_________________________________________________________________________

                                                                     -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............................................GTCAGTGCATGACAGAACaTGt.......   29198_1_0_0_0_0_1       MATURE            2        18.18            1        16.67            1        20.00                      18A2   
.............................................GTCAGTGCATGACAGAACaTGGa......   19846_1_0_0_0_0_0       MATURE            1         9.09            1        16.67            0         0.00                      18A3   
............................................AGTCAGTGCATGgCAGAACTTGGc......   10241_0_0_0_0_0_1       MATURE            1         9.09            0         0.00            1        20.00                     12G10   
.............................................GTCAGTGCATGACAGAACTT.........   38244_1_0_0_0_0_0       MATURE            1         9.09            1        16.67            0         0.00                        20   
.............................................GTCAGTGCATGACAGAACgTGa.......   39879_1_0_0_0_0_0       MATURE            1         9.09            1        16.67            0         0.00                      18G2   
.............................................GTCAGTGCATGACAGAACcTGa.......   19920_0_0_0_0_0_1       MATURE            1         9.09            0         0.00            1        20.00                      18C2   
.............................................GTCAGTGCATGACAGAACcTGGGt.....   11765_1_0_0_0_0_0       MATURE            1         9.09            1        16.67            0         0.00                      18C4   
.............................................GTCAGTGCATGACAGAtCTTGt.......   43514_0_0_0_0_0_1       MATURE            1         9.09            0         0.00            1        20.00                      16T4   
.............................................GTCAGTGCATGACAGAACTTGG.......   43474_1_0_0_0_0_0       MATURE            1         9.09            1        16.67            0         0.00                        22   
............................................AGTCAGTGCATGACAGAACTaGG.......   37092_0_0_0_0_0_1       MATURE            1         9.09            0         0.00            1        20.00                      20A2   
                                                                                                              ----------                ----------                ----------   
                                                                                                                      11                         6                         5                                          
                                                                                                                                           (54.55)                   (45.45)                                       




*** OTHER ***
_________________________________________________________________________
CCGGGCCTAGGTTCTGTGATACACTCCGACTCGGGCTCTGGAGCAGTCAGTGCATGACAGAACTTGGGCCCGG REF                  11                   96711707 - 96711779  
                                              TCAGTGCATGACAGAACTTGG       MATURE               11                   96711754 - 96711846  mmu-miR-152          +                    
_________________________________________________________________________

                                                                     -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
........AGGTTCTGTGATACACTCCGAC............................................   28883_1_0_0_0_0_0        OTHER            1        20.00            1        50.00            0         0.00                        22   
........AGGTTCTGTGATgCACTCCGACT...........................................    4810_1_0_0_0_0_0        OTHER            1        20.00            1        50.00            0         0.00                     12G10   
........AGGTTCTGTGATACACTCCaACT...........................................    8247_0_0_0_0_0_1        OTHER            1        20.00            0         0.00            1        33.33                      19A3   
........AGGTTCTGTGATACACTCCGACT...........................................   27227_0_0_0_0_0_1        OTHER            1        20.00            0         0.00            1        33.33                        23   
........AGGTTCTGTGATACAtTCCGA.............................................    9087_0_0_0_0_0_1        OTHER            1        20.00            0         0.00            1        33.33                      15T5   
                                                                                                              ----------                ----------                ----------   
                                                                                                                       5                         2                         3                                          
                                                                                                                                           (40.00)                   (60.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               6               5              11          68.75%
          OTHER               2               3               5          31.25%
                     ----------      ----------      ----------                
                              8               8              16                



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