[BEGIN]

REFERENCE HAIRPIN
************************************************************************************************************************
ID                 : mmu-mir-148a
DESCRIPTION        : mmu-mir-148a MI0000550 Mus musculus miR-148a stem-loop
CHROMOSOME         : 6
SPAN               : 51219811 - 51219909
LENGTH             : 99
SEQUENCE           : AGCCAGTTTGGTCTTTTGAGACAAAGTTCTGAGACACTCCGACTCTGAGTATGATAGAAGTCAGTGCACTACAGAACTTTGTCTCTAGAGGCTGTGGTC
OVERHANG THRESHOLD : 40%
************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-148a
ACCID      : MI0000550
PARENT     : mmu-mir-148a
CHROMOSOME : 6
START      : 51219811
STOP       : 51219909
OFFSET     : 61..82
SEQUENCE   : TCAGTGCACTACAGAACTTTGT
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-148a*
ACCID      : MI0000550
PARENT     : mmu-mir-148a
CHROMOSOME : 6
START      : 51219811
STOP       : 51219909
OFFSET     : 23..44
SEQUENCE   : AAAGTTCTGAGACACTCCGACT
STRAND     : -
******************************



*** MATURE ***
___________________________________________________________________________________________________
AGCCAGTTTGGTCTTTTGAGACAAAGTTCTGAGACACTCCGACTCTGAGTATGATAGAAGTCAGTGCACTACAGAACTTTGTCTCTAGAGGCTGTGGTC REF                  6                    51219811 - 51219909  
                                                            TCAGTGCACTACAGAACTTTGT                  MATURE               6                    51219872 - 51219991  mmu-miR-148a         -                    
                      AAAGTTCTGAGACACTCCGACT                                                        MATURESTAR           6                    51219834 - 51219953  mmu-miR-148a*        -                    
___________________________________________________________________________________________________

                                                                                               -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........................................................GTCAGTGCACTACAGAACTTTG...................   17738_0_0_0_0_0_5       MATURE            5        19.23            0         0.00            5        33.33                        22   
...........................................................GTCAGTGCACTACAGAACTTTGT..................   39570_2_0_0_0_0_3       MATURE            5        19.23            2        18.18            3        20.00                        23   
..........................................................AGTCAGTGCACTACAGAACcTTGT..................    3343_2_0_0_0_0_0       MATURE            2         7.69            2        18.18            0         0.00                      19C4   
..........................................................AGTCAGTGCACTACAGAACTTaGT..................   12693_0_0_0_0_0_2       MATURE            2         7.69            0         0.00            2        13.33                      21A2   
...........................................................GTCAGTGCACTACAGAACTaTGc..................   22493_0_0_0_0_0_1       MATURE            1         3.85            0         0.00            1         6.67                      19A2   
...........................................................GTCAGTGCACTACAGAACcTTGTt.................   26578_1_0_0_0_0_0       MATURE            1         3.85            1         9.09            0         0.00                      18C4   
...........................................................GTCAGTGCACTACAGAACT......................   12067_1_0_0_0_0_0       MATURE            1         3.85            1         9.09            0         0.00                        19   
...........................................................GTCAGTGCACTACAGAACcTTGT..................     902_1_0_0_0_0_0       MATURE            1         3.85            1         9.09            0         0.00                      18C4   
...........................................................GTCAGTGCACTACAGAACTTTGa..................   33916_0_0_0_0_0_1       MATURE            1         3.85            0         0.00            1         6.67                        22   
...........................................................GTCAGTGCACTACAGAtCTTTG...................   35978_0_0_0_0_0_1       MATURE            1         3.85            0         0.00            1         6.67                      16T5   
..........................................................AGTCAGTGCACTACAGAACTTTGa..................   40754_0_0_0_0_0_1       MATURE            1         3.85            0         0.00            1         6.67                        23   
...........................................................GTCAGTGCACTACAGAAtTTTGT..................   25696_1_0_0_0_0_0       MATURE            1         3.85            1         9.09            0         0.00                      17T5   
...........................................................GTCAGTGCACTACAGAgCTTTG...................   30567_1_0_0_0_0_0       MATURE            1         3.85            1         9.09            0         0.00                      16G5   
...........................................................GTCAGTGCACTACAGAACaTTG...................   26437_0_0_0_0_0_1       MATURE            1         3.85            0         0.00            1         6.67                      18A3   
..........................................................AGTCAGTGCACTACAGAACcTTt...................    3815_1_0_0_0_0_0       MATURE            1         3.85            1         9.09            0         0.00                      19C2   
..........................................................AGTCAGTGCACTACAGAACTTTG...................   17954_1_0_0_0_0_0       MATURE            1         3.85            1         9.09            0         0.00                        23   
                                                                                                                                        ----------                ----------                ----------   
                                                                                                                                                26                        11                        15                                          
                                                                                                                                                                     (42.31)                   (57.69)                                       




*** MATURESTAR ***
___________________________________________________________________________________________________
AGCCAGTTTGGTCTTTTGAGACAAAGTTCTGAGACACTCCGACTCTGAGTATGATAGAAGTCAGTGCACTACAGAACTTTGTCTCTAGAGGCTGTGGTC REF                  6                    51219811 - 51219909  
                                                            TCAGTGCACTACAGAACTTTGT                  MATURE               6                    51219872 - 51219991  mmu-miR-148a         -                    
                      AAAGTTCTGAGACACTCCGACT                                                        MATURESTAR           6                    51219834 - 51219953  mmu-miR-148a*        -                    
___________________________________________________________________________________________________

                                                                                               -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......................AAAGTTCTGAGACACTCCGACc........................................................        554_0_0_0_0_0_1   MATURESTAR            1        50.00            0         0.00            1       100.00                        21   
......................AAAGTTCTGAGACACTCCGACT........................................................      12084_1_0_0_0_0_0   MATURESTAR            1        50.00            1       100.00            0         0.00                        22   
                                                                                                                                           ----------                ----------                ----------   
                                                                                                                                                    2                         1                         1                                          
                                                                                                                                                                        (50.00)                   (50.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              11              15              26          92.86%
     MATURESTAR               1               1               2           7.14%
                     ----------      ----------      ----------                
                             12              16              28                



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