[BEGIN]
REFERENCE HAIRPIN
************************************************************************************************************************
ID : mmu-mir-148a
DESCRIPTION : mmu-mir-148a MI0000550 Mus musculus miR-148a stem-loop
CHROMOSOME : 6
SPAN : 51219811 - 51219909
LENGTH : 99
SEQUENCE : AGCCAGTTTGGTCTTTTGAGACAAAGTTCTGAGACACTCCGACTCTGAGTATGATAGAAGTCAGTGCACTACAGAACTTTGTCTCTAGAGGCTGTGGTC
OVERHANG THRESHOLD : 40%
************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-148a
ACCID : MI0000550
PARENT : mmu-mir-148a
CHROMOSOME : 6
START : 51219811
STOP : 51219909
OFFSET : 61..82
SEQUENCE : TCAGTGCACTACAGAACTTTGT
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-148a*
ACCID : MI0000550
PARENT : mmu-mir-148a
CHROMOSOME : 6
START : 51219811
STOP : 51219909
OFFSET : 23..44
SEQUENCE : AAAGTTCTGAGACACTCCGACT
STRAND : -
******************************
*** MATURE ***
___________________________________________________________________________________________________
AGCCAGTTTGGTCTTTTGAGACAAAGTTCTGAGACACTCCGACTCTGAGTATGATAGAAGTCAGTGCACTACAGAACTTTGTCTCTAGAGGCTGTGGTC REF 6 51219811 - 51219909
TCAGTGCACTACAGAACTTTGT MATURE 6 51219872 - 51219991 mmu-miR-148a -
AAAGTTCTGAGACACTCCGACT MATURESTAR 6 51219834 - 51219953 mmu-miR-148a* -
___________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........................................................GTCAGTGCACTACAGAACTTTG................... 17738_0_0_0_0_0_5 MATURE 5 19.23 0 0.00 5 33.33 22
...........................................................GTCAGTGCACTACAGAACTTTGT.................. 39570_2_0_0_0_0_3 MATURE 5 19.23 2 18.18 3 20.00 23
..........................................................AGTCAGTGCACTACAGAACcTTGT.................. 3343_2_0_0_0_0_0 MATURE 2 7.69 2 18.18 0 0.00 19C4
..........................................................AGTCAGTGCACTACAGAACTTaGT.................. 12693_0_0_0_0_0_2 MATURE 2 7.69 0 0.00 2 13.33 21A2
...........................................................GTCAGTGCACTACAGAACTaTGc.................. 22493_0_0_0_0_0_1 MATURE 1 3.85 0 0.00 1 6.67 19A2
...........................................................GTCAGTGCACTACAGAACcTTGTt................. 26578_1_0_0_0_0_0 MATURE 1 3.85 1 9.09 0 0.00 18C4
...........................................................GTCAGTGCACTACAGAACT...................... 12067_1_0_0_0_0_0 MATURE 1 3.85 1 9.09 0 0.00 19
...........................................................GTCAGTGCACTACAGAACcTTGT.................. 902_1_0_0_0_0_0 MATURE 1 3.85 1 9.09 0 0.00 18C4
...........................................................GTCAGTGCACTACAGAACTTTGa.................. 33916_0_0_0_0_0_1 MATURE 1 3.85 0 0.00 1 6.67 22
...........................................................GTCAGTGCACTACAGAtCTTTG................... 35978_0_0_0_0_0_1 MATURE 1 3.85 0 0.00 1 6.67 16T5
..........................................................AGTCAGTGCACTACAGAACTTTGa.................. 40754_0_0_0_0_0_1 MATURE 1 3.85 0 0.00 1 6.67 23
...........................................................GTCAGTGCACTACAGAAtTTTGT.................. 25696_1_0_0_0_0_0 MATURE 1 3.85 1 9.09 0 0.00 17T5
...........................................................GTCAGTGCACTACAGAgCTTTG................... 30567_1_0_0_0_0_0 MATURE 1 3.85 1 9.09 0 0.00 16G5
...........................................................GTCAGTGCACTACAGAACaTTG................... 26437_0_0_0_0_0_1 MATURE 1 3.85 0 0.00 1 6.67 18A3
..........................................................AGTCAGTGCACTACAGAACcTTt................... 3815_1_0_0_0_0_0 MATURE 1 3.85 1 9.09 0 0.00 19C2
..........................................................AGTCAGTGCACTACAGAACTTTG................... 17954_1_0_0_0_0_0 MATURE 1 3.85 1 9.09 0 0.00 23
---------- ---------- ----------
26 11 15
(42.31) (57.69)
*** MATURESTAR ***
___________________________________________________________________________________________________
AGCCAGTTTGGTCTTTTGAGACAAAGTTCTGAGACACTCCGACTCTGAGTATGATAGAAGTCAGTGCACTACAGAACTTTGTCTCTAGAGGCTGTGGTC REF 6 51219811 - 51219909
TCAGTGCACTACAGAACTTTGT MATURE 6 51219872 - 51219991 mmu-miR-148a -
AAAGTTCTGAGACACTCCGACT MATURESTAR 6 51219834 - 51219953 mmu-miR-148a* -
___________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......................AAAGTTCTGAGACACTCCGACc........................................................ 554_0_0_0_0_0_1 MATURESTAR 1 50.00 0 0.00 1 100.00 21
......................AAAGTTCTGAGACACTCCGACT........................................................ 12084_1_0_0_0_0_0 MATURESTAR 1 50.00 1 100.00 0 0.00 22
---------- ---------- ----------
2 1 1
(50.00) (50.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 11 15 26 92.86%
MATURESTAR 1 1 2 7.14%
---------- ---------- ----------
12 16 28
[END]