[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************************************************
ID                 : mmu-mir-146b
DESCRIPTION        : mmu-mir-146b MI0004665 Mus musculus miR-146b stem-loop
CHROMOSOME         : 19
SPAN               : 46417252 - 46417360
LENGTH             : 109
SEQUENCE           : GACTGAGAGAACTTTGGCCACCTGGCTCTGAGAACTGAATTCCATAGGCTGTGAGCTCTAGCAGACGCCCTAGGGACTCAGTTCTGGTGCCCGGCTGTGCTATACCATC
OVERHANG THRESHOLD : 40%
**********************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-146b
ACCID      : MI0004665
PARENT     : mmu-mir-146b
CHROMOSOME : 19
START      : 46417252
STOP       : 46417360
OFFSET     : 29..50
SEQUENCE   : TGAGAACTGAATTCCATAGGCT
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-146b*
ACCID      : MI0004665
PARENT     : mmu-mir-146b
CHROMOSOME : 19
START      : 46417252
STOP       : 46417360
OFFSET     : 67..88
SEQUENCE   : GCCCTAGGGACTCAGTTCTGGT
STRAND     : +
******************************



*** MATURE ***
_____________________________________________________________________________________________________________
GACTGAGAGAACTTTGGCCACCTGGCTCTGAGAACTGAATTCCATAGGCTGTGAGCTCTAGCAGACGCCCTAGGGACTCAGTTCTGGTGCCCGGCTGTGCTATACCATC REF                  19                   46417252 - 46417360  
                            TGAGAACTGAATTCCATAGGCT                                                            MATURE               19                   46417281 - 46417410  mmu-miR-146b         +                    
                                                                  GCCCTAGGGACTCAGTTCTGGT                      MATURESTAR           19                   46417319 - 46417448  mmu-miR-146b*        +                    
_____________________________________________________________________________________________________________

                                                                                                         -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............................GAGAACTGAATTCCATAGGt.............................................................   29402_1_0_0_0_0_2       MATURE            3         9.38            1         7.69            2        10.53                        19   
............................TGAGAACTGAATTCCATAGaCTGT..........................................................    4310_0_0_0_0_0_3       MATURE            3         9.38            0         0.00            3        15.79                      19A4   
.............................GAGAACTGAATTCCATAGGCTaTG.........................................................   34395_1_0_0_0_0_1       MATURE            2         6.25            1         7.69            1         5.26                      21A2   
.............................GAGAACTGAATTCCATAGaCTGT..........................................................   10407_1_0_0_0_0_1       MATURE            2         6.25            1         7.69            1         5.26                      18A4   
.............................GAGAACTGAATTCCATAGGCTGT..........................................................   29292_0_0_0_0_0_2       MATURE            2         6.25            0         0.00            2        10.53                        23   
.............................GAGAACTGAATTCCATAGcCTGT..........................................................    4441_1_0_0_0_0_1       MATURE            2         6.25            1         7.69            1         5.26                      18C4   
.............................GAGAACTGAATTCCATAGGCTGTa.........................................................   30183_0_0_0_0_0_1       MATURE            1         3.12            0         0.00            1         5.26                        23   
.......................GGCgCTGAGAACTGAATTCCAT.................................................................   14939_1_0_0_0_0_0       MATURE            1         3.12            1         7.69            0         0.00                      3G18   
............................TGAGAACTGAATTCCATAG...............................................................   11169_1_0_0_0_0_0       MATURE            1         3.12            1         7.69            0         0.00                        19   
.............................GAGAACTGAATTCCATAGaCTGTa.........................................................   14414_0_0_0_0_0_1       MATURE            1         3.12            0         0.00            1         5.26                      18A4   
............................TGAGAACTGAATTCCAcAGGC.............................................................   32620_1_0_0_0_0_0       MATURE            1         3.12            1         7.69            0         0.00                      16C4   
............................TGAGAACTGAATTCCATAGtCTGT..........................................................   38152_1_0_0_0_0_0       MATURE            1         3.12            1         7.69            0         0.00                      19T4   
............................TGAGAACTGAATTCCAcAGGCT............................................................   41566_0_0_0_0_0_1       MATURE            1         3.12            0         0.00            1         5.26                      16C5   
............................TGAGAACTGAATTCCATAGGgTGT..........................................................   28459_1_0_0_0_0_0       MATURE            1         3.12            1         7.69            0         0.00                      20G3   
.............................GAGAACTGAATTCCATAGGCTG...........................................................   12397_1_0_0_0_0_0       MATURE            1         3.12            1         7.69            0         0.00                        22   
...............................GAACTGAATTCCATAGGCTGc..........................................................    6216_0_0_0_0_0_1       MATURE            1         3.12            0         0.00            1         5.26                        20   
............................TGAGAACTGAATTCCATAGt..............................................................   39461_0_0_0_0_0_1       MATURE            1         3.12            0         0.00            1         5.26                        19   
.............................GAGAACTGAATTCCATAaGCTGT..........................................................     218_1_0_0_0_0_0       MATURE            1         3.12            1         7.69            0         0.00                      17A5   
............................TGAGAACTGAATTCCATAGGt.............................................................   23508_1_0_0_0_0_0       MATURE            1         3.12            1         7.69            0         0.00                        20   
.............................GAGAACTGAATTCCATAGGCc............................................................   13349_1_0_0_0_0_0       MATURE            1         3.12            1         7.69            0         0.00                        20   
.............................GAGAACTGAATTCCATAGtCTt...........................................................   21115_0_0_0_0_0_1       MATURE            1         3.12            0         0.00            1         5.26                      18T2   
.............................GAGAACTGAATTCCATAcGCTGc..........................................................   11538_0_0_0_0_0_1       MATURE            1         3.12            0         0.00            1         5.26                      17C4   
.............................GAGAACTGAATTCCATAGG..............................................................   38465_0_0_0_0_0_1       MATURE            1         3.12            0         0.00            1         5.26                        19   
..............................AGAAtTGAATTCCATAGGCTGTa.........................................................   14347_0_0_0_0_0_1       MATURE            1         3.12            0         0.00            1         5.26                      4T17   
                                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                                          32                        13                        19                                          
                                                                                                                                                                               (40.62)                   (59.38)                                       




*** MATURESTAR ***
_____________________________________________________________________________________________________________
GACTGAGAGAACTTTGGCCACCTGGCTCTGAGAACTGAATTCCATAGGCTGTGAGCTCTAGCAGACGCCCTAGGGACTCAGTTCTGGTGCCCGGCTGTGCTATACCATC REF                  19                   46417252 - 46417360  
                            TGAGAACTGAATTCCATAGGCT                                                            MATURE               19                   46417281 - 46417410  mmu-miR-146b         +                    
                                                                  GCCCTAGGGACTCAGTTCTGGT                      MATURESTAR           19                   46417319 - 46417448  mmu-miR-146b*        +                    
_____________________________________________________________________________________________________________

                                                                                                         -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..................................................................GCCCTAGGGACTCAGTcCTGGT......................   26295_0_0_0_0_0_1   MATURESTAR            1       100.00            0            0            1       100.00                      16C5   
                                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                                           1                         0                         1                                          
                                                                                                                                                                                (0.00)                  (100.00)                                       




*** OTHER ***
_____________________________________________________________________________________________________________
GACTGAGAGAACTTTGGCCACCTGGCTCTGAGAACTGAATTCCATAGGCTGTGAGCTCTAGCAGACGCCCTAGGGACTCAGTTCTGGTGCCCGGCTGTGCTATACCATC REF                  19                   46417252 - 46417360  
                            TGAGAACTGAATTCCATAGGCT                                                            MATURE               19                   46417281 - 46417410  mmu-miR-146b         +                    
                                                                  GCCCTAGGGACTCAGTTCTGGT                      MATURESTAR           19                   46417319 - 46417448  mmu-miR-146b*        +                    
_____________________________________________________________________________________________________________

                                                                                                         -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.................................................................................TTCTGGTGCCCGGCTGTGCTATgCC....   38627_0_0_0_0_0_1        OTHER            1       100.00            0            0            1       100.00                      22G2   
                                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                                           1                         0                         1                                          
                                                                                                                                                                                (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              13              19              32          94.12%
     MATURESTAR               0               1               1           2.94%
          OTHER               0               1               1           2.94%
                     ----------      ----------      ----------                
                             13              21              34                



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