[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************************************************
ID : mmu-mir-146b
DESCRIPTION : mmu-mir-146b MI0004665 Mus musculus miR-146b stem-loop
CHROMOSOME : 19
SPAN : 46417252 - 46417360
LENGTH : 109
SEQUENCE : GACTGAGAGAACTTTGGCCACCTGGCTCTGAGAACTGAATTCCATAGGCTGTGAGCTCTAGCAGACGCCCTAGGGACTCAGTTCTGGTGCCCGGCTGTGCTATACCATC
OVERHANG THRESHOLD : 40%
**********************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-146b
ACCID : MI0004665
PARENT : mmu-mir-146b
CHROMOSOME : 19
START : 46417252
STOP : 46417360
OFFSET : 29..50
SEQUENCE : TGAGAACTGAATTCCATAGGCT
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-146b*
ACCID : MI0004665
PARENT : mmu-mir-146b
CHROMOSOME : 19
START : 46417252
STOP : 46417360
OFFSET : 67..88
SEQUENCE : GCCCTAGGGACTCAGTTCTGGT
STRAND : +
******************************
*** MATURE ***
_____________________________________________________________________________________________________________
GACTGAGAGAACTTTGGCCACCTGGCTCTGAGAACTGAATTCCATAGGCTGTGAGCTCTAGCAGACGCCCTAGGGACTCAGTTCTGGTGCCCGGCTGTGCTATACCATC REF 19 46417252 - 46417360
TGAGAACTGAATTCCATAGGCT MATURE 19 46417281 - 46417410 mmu-miR-146b +
GCCCTAGGGACTCAGTTCTGGT MATURESTAR 19 46417319 - 46417448 mmu-miR-146b* +
_____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................GAGAACTGAATTCCATAGGt............................................................. 29402_1_0_0_0_0_2 MATURE 3 9.38 1 7.69 2 10.53 19
............................TGAGAACTGAATTCCATAGaCTGT.......................................................... 4310_0_0_0_0_0_3 MATURE 3 9.38 0 0.00 3 15.79 19A4
.............................GAGAACTGAATTCCATAGGCTaTG......................................................... 34395_1_0_0_0_0_1 MATURE 2 6.25 1 7.69 1 5.26 21A2
.............................GAGAACTGAATTCCATAGaCTGT.......................................................... 10407_1_0_0_0_0_1 MATURE 2 6.25 1 7.69 1 5.26 18A4
.............................GAGAACTGAATTCCATAGGCTGT.......................................................... 29292_0_0_0_0_0_2 MATURE 2 6.25 0 0.00 2 10.53 23
.............................GAGAACTGAATTCCATAGcCTGT.......................................................... 4441_1_0_0_0_0_1 MATURE 2 6.25 1 7.69 1 5.26 18C4
.............................GAGAACTGAATTCCATAGGCTGTa......................................................... 30183_0_0_0_0_0_1 MATURE 1 3.12 0 0.00 1 5.26 23
.......................GGCgCTGAGAACTGAATTCCAT................................................................. 14939_1_0_0_0_0_0 MATURE 1 3.12 1 7.69 0 0.00 3G18
............................TGAGAACTGAATTCCATAG............................................................... 11169_1_0_0_0_0_0 MATURE 1 3.12 1 7.69 0 0.00 19
.............................GAGAACTGAATTCCATAGaCTGTa......................................................... 14414_0_0_0_0_0_1 MATURE 1 3.12 0 0.00 1 5.26 18A4
............................TGAGAACTGAATTCCAcAGGC............................................................. 32620_1_0_0_0_0_0 MATURE 1 3.12 1 7.69 0 0.00 16C4
............................TGAGAACTGAATTCCATAGtCTGT.......................................................... 38152_1_0_0_0_0_0 MATURE 1 3.12 1 7.69 0 0.00 19T4
............................TGAGAACTGAATTCCAcAGGCT............................................................ 41566_0_0_0_0_0_1 MATURE 1 3.12 0 0.00 1 5.26 16C5
............................TGAGAACTGAATTCCATAGGgTGT.......................................................... 28459_1_0_0_0_0_0 MATURE 1 3.12 1 7.69 0 0.00 20G3
.............................GAGAACTGAATTCCATAGGCTG........................................................... 12397_1_0_0_0_0_0 MATURE 1 3.12 1 7.69 0 0.00 22
...............................GAACTGAATTCCATAGGCTGc.......................................................... 6216_0_0_0_0_0_1 MATURE 1 3.12 0 0.00 1 5.26 20
............................TGAGAACTGAATTCCATAGt.............................................................. 39461_0_0_0_0_0_1 MATURE 1 3.12 0 0.00 1 5.26 19
.............................GAGAACTGAATTCCATAaGCTGT.......................................................... 218_1_0_0_0_0_0 MATURE 1 3.12 1 7.69 0 0.00 17A5
............................TGAGAACTGAATTCCATAGGt............................................................. 23508_1_0_0_0_0_0 MATURE 1 3.12 1 7.69 0 0.00 20
.............................GAGAACTGAATTCCATAGGCc............................................................ 13349_1_0_0_0_0_0 MATURE 1 3.12 1 7.69 0 0.00 20
.............................GAGAACTGAATTCCATAGtCTt........................................................... 21115_0_0_0_0_0_1 MATURE 1 3.12 0 0.00 1 5.26 18T2
.............................GAGAACTGAATTCCATAcGCTGc.......................................................... 11538_0_0_0_0_0_1 MATURE 1 3.12 0 0.00 1 5.26 17C4
.............................GAGAACTGAATTCCATAGG.............................................................. 38465_0_0_0_0_0_1 MATURE 1 3.12 0 0.00 1 5.26 19
..............................AGAAtTGAATTCCATAGGCTGTa......................................................... 14347_0_0_0_0_0_1 MATURE 1 3.12 0 0.00 1 5.26 4T17
---------- ---------- ----------
32 13 19
(40.62) (59.38)
*** MATURESTAR ***
_____________________________________________________________________________________________________________
GACTGAGAGAACTTTGGCCACCTGGCTCTGAGAACTGAATTCCATAGGCTGTGAGCTCTAGCAGACGCCCTAGGGACTCAGTTCTGGTGCCCGGCTGTGCTATACCATC REF 19 46417252 - 46417360
TGAGAACTGAATTCCATAGGCT MATURE 19 46417281 - 46417410 mmu-miR-146b +
GCCCTAGGGACTCAGTTCTGGT MATURESTAR 19 46417319 - 46417448 mmu-miR-146b* +
_____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................................................................GCCCTAGGGACTCAGTcCTGGT...................... 26295_0_0_0_0_0_1 MATURESTAR 1 100.00 0 0 1 100.00 16C5
---------- ---------- ----------
1 0 1
(0.00) (100.00)
*** OTHER ***
_____________________________________________________________________________________________________________
GACTGAGAGAACTTTGGCCACCTGGCTCTGAGAACTGAATTCCATAGGCTGTGAGCTCTAGCAGACGCCCTAGGGACTCAGTTCTGGTGCCCGGCTGTGCTATACCATC REF 19 46417252 - 46417360
TGAGAACTGAATTCCATAGGCT MATURE 19 46417281 - 46417410 mmu-miR-146b +
GCCCTAGGGACTCAGTTCTGGT MATURESTAR 19 46417319 - 46417448 mmu-miR-146b* +
_____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................................................................................TTCTGGTGCCCGGCTGTGCTATgCC.... 38627_0_0_0_0_0_1 OTHER 1 100.00 0 0 1 100.00 22G2
---------- ---------- ----------
1 0 1
(0.00) (100.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 13 19 32 94.12%
MATURESTAR 0 1 1 2.94%
OTHER 0 1 1 2.94%
---------- ---------- ----------
13 21 34
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