[BEGIN]

REFERENCE HAIRPIN
**************************************************************************************
ID                 : mmu-mir-146a
DESCRIPTION        : mmu-mir-146a MI0000170 Mus musculus miR-146a stem-loop
CHROMOSOME         : 11
SPAN               : 43187899 - 43187963
LENGTH             : 65
SEQUENCE           : AGCTCTGAGAACTGAATTCCATGGGTTATATCAATGTCAGACCTGTGAAATTCAGTTCTTCAGCT
OVERHANG THRESHOLD : 40%
**************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-146a
ACCID      : MI0000170
PARENT     : mmu-mir-146a
CHROMOSOME : 11
START      : 43187899
STOP       : 43187963
OFFSET     : 6..27
SEQUENCE   : TGAGAACTGAATTCCATGGGTT
STRAND     : -
******************************



*** MATURE ***
_________________________________________________________________
AGCTCTGAGAACTGAATTCCATGGGTTATATCAATGTCAGACCTGTGAAATTCAGTTCTTCAGCT REF                  11                   43187899 - 43187963  
     TGAGAACTGAATTCCATGGGTT                                       MATURE               11                   43187905 - 43187990  mmu-miR-146a         -                    
_________________________________________________________________

                                                             -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....TGAaAACTGAATTCCATGGGTTA......................................   24715_2_0_0_0_0_8       MATURE           10         7.04            2         4.65            8         8.08                      3A19   
......GAGAACTGAATTCCATGGGT........................................   27634_1_0_0_0_0_7       MATURE            8         5.63            1         2.33            7         7.07                        20   
......GAGAACTGAATTCCATGGGTTAT.....................................   26802_0_0_0_0_0_8       MATURE            8         5.63            0         0.00            8         8.08                        23   
.....TGAaAACTGAATTCCATGGGTTt......................................   39951_0_0_0_0_0_8       MATURE            8         5.63            0         0.00            8         8.08                      3A18   
......GAaAACTGAATTCCATGGGTTA......................................   36187_1_0_0_0_0_6       MATURE            7         4.93            1         2.33            6         6.06                      2A19   
.....TGAGAACTGAATTCCATGGaTTAT.....................................    7324_1_0_0_0_0_3       MATURE            4         2.82            1         2.33            3         3.03                      19A4   
.....TGAGAACTGAATTCCATGGaTTA......................................   32829_0_0_0_0_0_4       MATURE            4         2.82            0         0.00            4         4.04                      19A3   
.....TGAGAACTGAATTCCATGGGTTAT.....................................   40757_1_0_0_0_0_2       MATURE            3         2.11            1         2.33            2         2.02                        24   
......GAGAACTGAATTCCATGGG.........................................   16164_1_0_0_0_0_2       MATURE            3         2.11            1         2.33            2         2.02                        19   
......GAGAACTGAATTCCATGGaTTAT.....................................   39860_1_0_0_0_0_2       MATURE            3         2.11            1         2.33            2         2.02                      18A4   
......GAGAAtTGAATTCCATGGGTTAT.....................................   18708_0_0_0_0_0_2       MATURE            2         1.41            0         0.00            2         2.02                      5T17   
......GAGAACTGAATTCCATGGGTT.......................................   35598_1_0_0_0_0_1       MATURE            2         1.41            1         2.33            1         1.01                        21   
......GAGAACTGAATTCCATGGaTTt......................................   39875_1_0_0_0_0_1       MATURE            2         1.41            1         2.33            1         1.01                      18A2   
.........AACTGAATTCCATGGGTTA......................................   16543_1_0_0_0_0_1       MATURE            2         1.41            1         2.33            1         1.01                        19   
......GAGAACTGAATTCCATGGtTT.......................................   42454_2_0_0_0_0_0       MATURE            2         1.41            2         4.65            0         0.00                      18T2   
.....TGAaAACTGAATTCCATGGGTT.......................................    3110_1_0_0_0_0_1       MATURE            2         1.41            1         2.33            1         1.01                      3A18   
......GAGAACTGAATTCCATGtGTTAT.....................................    3579_0_0_0_0_0_2       MATURE            2         1.41            0         0.00            2         2.02                      17T5   
.....TGAGAACTGAATTCCAaGGGTT.......................................   43914_0_0_0_0_0_2       MATURE            2         1.41            0         0.00            2         2.02                      16A5   
.....TGAGAACTGAATTCCATGGGTcAT.....................................   39115_0_0_0_0_0_2       MATURE            2         1.41            0         0.00            2         2.02                      21C2   
.......AGAACTGAATTCCATGGGTT.......................................   11265_2_0_0_0_0_0       MATURE            2         1.41            2         4.65            0         0.00                        20   
......GAGAACTGAATTCCATGGaTT.......................................   18971_2_0_0_0_0_0       MATURE            2         1.41            2         4.65            0         0.00                      18A2   
......GAGAACTGAATTCCATGtGTTAa.....................................    9064_0_0_0_0_0_2       MATURE            2         1.41            0         0.00            2         2.02                      17T4   
.....TGAGAACTGAATTCCATGGGTTt......................................   26049_0_0_0_0_0_2       MATURE            2         1.41            0         0.00            2         2.02                        22   
......GAGAACTGAATTCCATGGGTTt......................................   41609_1_0_0_0_0_1       MATURE            2         1.41            1         2.33            1         1.01                        21   
.......AGAACTGAATTCCATGGGTTAT.....................................    6175_0_0_0_0_0_2       MATURE            2         1.41            0         0.00            2         2.02                        22   
.....TGAGAACTGAATTCCAcGGGTT.......................................    4685_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      16C5   
.....TGAGAACTGAATTCCATGGtTT.......................................   25765_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      19T2   
.......AGAACTGAATTCCATGGaTTA......................................   32824_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      17A3   
.....TGAGAACTGAATTCCATGGaTT.......................................   10464_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      19A2   
.......AGAACTGAATTCCATGGGTTATg....................................   33724_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                        22   
.......AGAACTGAATTCCATGGGTc.......................................   25882_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                        19   
.....TGAGAACTGAATTCCAaGGGT........................................   26539_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      16A4   
.....TGAGAACTGAATTCCATGGG.........................................    8382_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                        20   
.....TGAGAACTGAATTCCATGGt.........................................   28067_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                        19   
.GCTCTGAGAACTGAATTCCATGGt.........................................    6139_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                        23   
......GAGAcCTGAATTCCATGGGTTAT.....................................    5493_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      4C18   
......GAGAACTGAATTCCAaGGGTT.......................................   30648_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      15A5   
........GAACTGAATTCCATGGGTTt......................................   39315_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                        19   
......GAGAACTGAATTCCATGcGTTAT.....................................   33178_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      17C5   
.....TGAGAACTGAATTCCATGcGTTAT.....................................   14468_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      18C5   
......GAGAACTGAATTCCATGGtTTAT.....................................   10032_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      18T4   
..........ACTGAATTCCATGGGTTAT.....................................   10661_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                        19   
...TCTGAGAACTGAATTCCATGGaTTt......................................   17372_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      21A2   
.....TGAGAACTGAATTCCATGcGTTt......................................    9489_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      18C3   
.......AGAACTGAATTCCATGGGTTA......................................    9654_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                        21   
......GAGAACTGAATTCCATGGcTT.......................................   16552_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      18C2   
.......AGAACTGAATTCCATGGtTTAT.....................................   21346_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      17T4   
.....TGAGAACTGAATTCCATGGGTgATt....................................   25371_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      21G2   
.....TGAGAACTGAATTCCATGGaTTAg.....................................    1814_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      19A3   
.....TGAGAACTGAATTCCATGGaTTAa.....................................   27676_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      19A3   
......GAGAACTGAATTCCATGGaTTATt....................................    2272_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      18A4   
.GCgCTGAGAACTGAATTCCATGt..........................................   44188_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      2G19   
.....TGgGAACTGAATTCCATGGGTTt......................................   39383_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      2G19   
......GAGAACTGAATTCCATGGGTTAgAT...................................   20781_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      22G2   
........GAACTGAATTCCATGGGTTA......................................   24089_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                        20   
......GAGAACTGAATTCCATGGGTTATt....................................    3907_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                        23   
.GCcCTGAGAACTGAATTCCATGGGT........................................   19490_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      2C22   
......GAGAACTGAATTCCATGGaTTA......................................   23472_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      18A3   
.......AGAACTGAATTCCATGGGT........................................   17595_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                        19   
...........CTGAATTCCATGGGTTATAT...................................   36607_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                        20   
.....TGAGAACTGAATTCCATGGGc........................................   40575_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                        20   
.....TGAGAACTGAATTCCATGGGT........................................   31606_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                        21   
....CTGAGAACTGAATTCCATGGaTTAT.....................................   18348_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      20A4   
.....TGAGAACTGAATTCCcTGGGT........................................   33580_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      15C5   
.......AGAACTGAATTCCATGGaTTAT.....................................    8780_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      17A4   
.....TGAGAAaTGAATTCCATGGGTTt......................................   35056_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      6A15   
.....TGAGAACTGAATTCCATGGGTTATA....................................   43862_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                        25   
.....TGgGAACTGAATTCCATGGGTT.......................................   41903_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      2G19   
....CTGAGAACTGAATTCCATGcGTTAT.....................................   18328_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      19C5   
.......AGAAtTGAATTCCATGGGTTATA....................................   10945_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      4T18   
......GAGAACTGAATTCCATGGGTcAT.....................................   29665_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      20C2   
......GAGAACTGAATTCCATGGGTaAT.....................................   23129_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      20A2   
...TCTGAGAACTGAATTCCATGaGTTt......................................    9523_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      20A3   
.....TGAGAACTGAATTCCATGtGTTt......................................    2556_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      18T3   
.....TGAGAACTGAATTCCATGGaTTt......................................   23651_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                      19A2   
......GAGAACTGAATTCCATGGGTaATt....................................   24794_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      20A2   
....CTGAGAACTGAATTCCATG...........................................   26817_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         1.01                        19   
.....TGAGAACTGAATTCCATGcGTTAc.....................................   43718_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                      18C4   
....CTGAGAACTGAATTCCATGGGTc.......................................   43679_1_0_0_0_0_0       MATURE            1         0.70            1         2.33            0         0.00                        22   
                                                                                                      ----------                ----------                ----------   
                                                                                                             142                        43                        99                                          
                                                                                                                                   (30.28)                   (69.72)                                       




*** OTHER ***
_________________________________________________________________
AGCTCTGAGAACTGAATTCCATGGGTTATATCAATGTCAGACCTGTGAAATTCAGTTCTTCAGCT REF                  11                   43187899 - 43187963  
     TGAGAACTGAATTCCATGGGTT                                       MATURE               11                   43187905 - 43187990  mmu-miR-146a         -                    
_________________________________________________________________

                                                             -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..........................................CTGTGAAATTCAGTTCTTCAG...   35074_1_0_0_0_0_1        OTHER            2        11.76            1         7.14            1        33.33                        21   
.......................................GACCTGTGAAATTCAGTTCTTC.....   38629_1_0_0_0_0_1        OTHER            2        11.76            1         7.14            1        33.33                        22   
.......................................GAtCTGTGAAATTCAGTTCTTCAG...    2864_2_0_0_0_0_0        OTHER            2        11.76            2        14.29            0         0.00                      2T21   
..........................................CTGTGAAATTCAGTTCaTCAG...   42899_1_0_0_0_0_1        OTHER            2        11.76            1         7.14            1        33.33                      16A4   
..........................................CTGTGAAATTCAGTTCTcCAG...   39424_2_0_0_0_0_0        OTHER            2        11.76            2        14.29            0         0.00                      17C3   
.......................................GACCTGTGAAATTCAGTTgTTCA....   31041_1_0_0_0_0_0        OTHER            1         5.88            1         7.14            0         0.00                      18G4   
...........................................TGTGAAATTCAGTTCTTCAa...   31384_1_0_0_0_0_0        OTHER            1         5.88            1         7.14            0         0.00                        19   
........................GTTATATCAATGTCAGACC.......................   11368_1_0_0_0_0_0        OTHER            1         5.88            1         7.14            0         0.00                        19   
..........................................CTGTGAAATTCAGTTCTTCAGt..   25884_1_0_0_0_0_0        OTHER            1         5.88            1         7.14            0         0.00                        21   
.......................................GACCTGTGAAATTCAaTTCTT......   31125_1_0_0_0_0_0        OTHER            1         5.88            1         7.14            0         0.00                      15A5   
.......................................GACCTGTGAAATTCAGTTCa.......      91_1_0_0_0_0_0        OTHER            1         5.88            1         7.14            0         0.00                        19   
......................................AGACCTGTGAAATTCAGTaCTTCA....   35034_1_0_0_0_0_0        OTHER            1         5.88            1         7.14            0         0.00                      18A5   
                                                                                                      ----------                ----------                ----------   
                                                                                                              17                        14                         3                                          
                                                                                                                                   (82.35)                   (17.65)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              43              99             142          89.31%
          OTHER              14               3              17          10.69%
                     ----------      ----------      ----------                
                             57             102             159                



[END]
