[BEGIN]
REFERENCE HAIRPIN
**************************************************************************************
ID : mmu-mir-146a
DESCRIPTION : mmu-mir-146a MI0000170 Mus musculus miR-146a stem-loop
CHROMOSOME : 11
SPAN : 43187899 - 43187963
LENGTH : 65
SEQUENCE : AGCTCTGAGAACTGAATTCCATGGGTTATATCAATGTCAGACCTGTGAAATTCAGTTCTTCAGCT
OVERHANG THRESHOLD : 40%
**************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-146a
ACCID : MI0000170
PARENT : mmu-mir-146a
CHROMOSOME : 11
START : 43187899
STOP : 43187963
OFFSET : 6..27
SEQUENCE : TGAGAACTGAATTCCATGGGTT
STRAND : -
******************************
*** MATURE ***
_________________________________________________________________
AGCTCTGAGAACTGAATTCCATGGGTTATATCAATGTCAGACCTGTGAAATTCAGTTCTTCAGCT REF 11 43187899 - 43187963
TGAGAACTGAATTCCATGGGTT MATURE 11 43187905 - 43187990 mmu-miR-146a -
_________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....TGAaAACTGAATTCCATGGGTTA...................................... 24715_2_0_0_0_0_8 MATURE 10 7.04 2 4.65 8 8.08 3A19
......GAGAACTGAATTCCATGGGT........................................ 27634_1_0_0_0_0_7 MATURE 8 5.63 1 2.33 7 7.07 20
......GAGAACTGAATTCCATGGGTTAT..................................... 26802_0_0_0_0_0_8 MATURE 8 5.63 0 0.00 8 8.08 23
.....TGAaAACTGAATTCCATGGGTTt...................................... 39951_0_0_0_0_0_8 MATURE 8 5.63 0 0.00 8 8.08 3A18
......GAaAACTGAATTCCATGGGTTA...................................... 36187_1_0_0_0_0_6 MATURE 7 4.93 1 2.33 6 6.06 2A19
.....TGAGAACTGAATTCCATGGaTTAT..................................... 7324_1_0_0_0_0_3 MATURE 4 2.82 1 2.33 3 3.03 19A4
.....TGAGAACTGAATTCCATGGaTTA...................................... 32829_0_0_0_0_0_4 MATURE 4 2.82 0 0.00 4 4.04 19A3
.....TGAGAACTGAATTCCATGGGTTAT..................................... 40757_1_0_0_0_0_2 MATURE 3 2.11 1 2.33 2 2.02 24
......GAGAACTGAATTCCATGGG......................................... 16164_1_0_0_0_0_2 MATURE 3 2.11 1 2.33 2 2.02 19
......GAGAACTGAATTCCATGGaTTAT..................................... 39860_1_0_0_0_0_2 MATURE 3 2.11 1 2.33 2 2.02 18A4
......GAGAAtTGAATTCCATGGGTTAT..................................... 18708_0_0_0_0_0_2 MATURE 2 1.41 0 0.00 2 2.02 5T17
......GAGAACTGAATTCCATGGGTT....................................... 35598_1_0_0_0_0_1 MATURE 2 1.41 1 2.33 1 1.01 21
......GAGAACTGAATTCCATGGaTTt...................................... 39875_1_0_0_0_0_1 MATURE 2 1.41 1 2.33 1 1.01 18A2
.........AACTGAATTCCATGGGTTA...................................... 16543_1_0_0_0_0_1 MATURE 2 1.41 1 2.33 1 1.01 19
......GAGAACTGAATTCCATGGtTT....................................... 42454_2_0_0_0_0_0 MATURE 2 1.41 2 4.65 0 0.00 18T2
.....TGAaAACTGAATTCCATGGGTT....................................... 3110_1_0_0_0_0_1 MATURE 2 1.41 1 2.33 1 1.01 3A18
......GAGAACTGAATTCCATGtGTTAT..................................... 3579_0_0_0_0_0_2 MATURE 2 1.41 0 0.00 2 2.02 17T5
.....TGAGAACTGAATTCCAaGGGTT....................................... 43914_0_0_0_0_0_2 MATURE 2 1.41 0 0.00 2 2.02 16A5
.....TGAGAACTGAATTCCATGGGTcAT..................................... 39115_0_0_0_0_0_2 MATURE 2 1.41 0 0.00 2 2.02 21C2
.......AGAACTGAATTCCATGGGTT....................................... 11265_2_0_0_0_0_0 MATURE 2 1.41 2 4.65 0 0.00 20
......GAGAACTGAATTCCATGGaTT....................................... 18971_2_0_0_0_0_0 MATURE 2 1.41 2 4.65 0 0.00 18A2
......GAGAACTGAATTCCATGtGTTAa..................................... 9064_0_0_0_0_0_2 MATURE 2 1.41 0 0.00 2 2.02 17T4
.....TGAGAACTGAATTCCATGGGTTt...................................... 26049_0_0_0_0_0_2 MATURE 2 1.41 0 0.00 2 2.02 22
......GAGAACTGAATTCCATGGGTTt...................................... 41609_1_0_0_0_0_1 MATURE 2 1.41 1 2.33 1 1.01 21
.......AGAACTGAATTCCATGGGTTAT..................................... 6175_0_0_0_0_0_2 MATURE 2 1.41 0 0.00 2 2.02 22
.....TGAGAACTGAATTCCAcGGGTT....................................... 4685_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 16C5
.....TGAGAACTGAATTCCATGGtTT....................................... 25765_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 19T2
.......AGAACTGAATTCCATGGaTTA...................................... 32824_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 17A3
.....TGAGAACTGAATTCCATGGaTT....................................... 10464_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 19A2
.......AGAACTGAATTCCATGGGTTATg.................................... 33724_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 22
.......AGAACTGAATTCCATGGGTc....................................... 25882_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 19
.....TGAGAACTGAATTCCAaGGGT........................................ 26539_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 16A4
.....TGAGAACTGAATTCCATGGG......................................... 8382_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 20
.....TGAGAACTGAATTCCATGGt......................................... 28067_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 19
.GCTCTGAGAACTGAATTCCATGGt......................................... 6139_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 23
......GAGAcCTGAATTCCATGGGTTAT..................................... 5493_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 4C18
......GAGAACTGAATTCCAaGGGTT....................................... 30648_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 15A5
........GAACTGAATTCCATGGGTTt...................................... 39315_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 19
......GAGAACTGAATTCCATGcGTTAT..................................... 33178_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 17C5
.....TGAGAACTGAATTCCATGcGTTAT..................................... 14468_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 18C5
......GAGAACTGAATTCCATGGtTTAT..................................... 10032_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 18T4
..........ACTGAATTCCATGGGTTAT..................................... 10661_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 19
...TCTGAGAACTGAATTCCATGGaTTt...................................... 17372_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 21A2
.....TGAGAACTGAATTCCATGcGTTt...................................... 9489_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 18C3
.......AGAACTGAATTCCATGGGTTA...................................... 9654_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 21
......GAGAACTGAATTCCATGGcTT....................................... 16552_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 18C2
.......AGAACTGAATTCCATGGtTTAT..................................... 21346_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 17T4
.....TGAGAACTGAATTCCATGGGTgATt.................................... 25371_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 21G2
.....TGAGAACTGAATTCCATGGaTTAg..................................... 1814_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 19A3
.....TGAGAACTGAATTCCATGGaTTAa..................................... 27676_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 19A3
......GAGAACTGAATTCCATGGaTTATt.................................... 2272_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 18A4
.GCgCTGAGAACTGAATTCCATGt.......................................... 44188_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 2G19
.....TGgGAACTGAATTCCATGGGTTt...................................... 39383_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 2G19
......GAGAACTGAATTCCATGGGTTAgAT................................... 20781_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 22G2
........GAACTGAATTCCATGGGTTA...................................... 24089_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 20
......GAGAACTGAATTCCATGGGTTATt.................................... 3907_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 23
.GCcCTGAGAACTGAATTCCATGGGT........................................ 19490_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 2C22
......GAGAACTGAATTCCATGGaTTA...................................... 23472_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 18A3
.......AGAACTGAATTCCATGGGT........................................ 17595_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 19
...........CTGAATTCCATGGGTTATAT................................... 36607_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 20
.....TGAGAACTGAATTCCATGGGc........................................ 40575_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 20
.....TGAGAACTGAATTCCATGGGT........................................ 31606_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 21
....CTGAGAACTGAATTCCATGGaTTAT..................................... 18348_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 20A4
.....TGAGAACTGAATTCCcTGGGT........................................ 33580_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 15C5
.......AGAACTGAATTCCATGGaTTAT..................................... 8780_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 17A4
.....TGAGAAaTGAATTCCATGGGTTt...................................... 35056_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 6A15
.....TGAGAACTGAATTCCATGGGTTATA.................................... 43862_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 25
.....TGgGAACTGAATTCCATGGGTT....................................... 41903_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 2G19
....CTGAGAACTGAATTCCATGcGTTAT..................................... 18328_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 19C5
.......AGAAtTGAATTCCATGGGTTATA.................................... 10945_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 4T18
......GAGAACTGAATTCCATGGGTcAT..................................... 29665_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 20C2
......GAGAACTGAATTCCATGGGTaAT..................................... 23129_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 20A2
...TCTGAGAACTGAATTCCATGaGTTt...................................... 9523_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 20A3
.....TGAGAACTGAATTCCATGtGTTt...................................... 2556_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 18T3
.....TGAGAACTGAATTCCATGGaTTt...................................... 23651_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 19A2
......GAGAACTGAATTCCATGGGTaATt.................................... 24794_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 20A2
....CTGAGAACTGAATTCCATG........................................... 26817_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 1.01 19
.....TGAGAACTGAATTCCATGcGTTAc..................................... 43718_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 18C4
....CTGAGAACTGAATTCCATGGGTc....................................... 43679_1_0_0_0_0_0 MATURE 1 0.70 1 2.33 0 0.00 22
---------- ---------- ----------
142 43 99
(30.28) (69.72)
*** OTHER ***
_________________________________________________________________
AGCTCTGAGAACTGAATTCCATGGGTTATATCAATGTCAGACCTGTGAAATTCAGTTCTTCAGCT REF 11 43187899 - 43187963
TGAGAACTGAATTCCATGGGTT MATURE 11 43187905 - 43187990 mmu-miR-146a -
_________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................................CTGTGAAATTCAGTTCTTCAG... 35074_1_0_0_0_0_1 OTHER 2 11.76 1 7.14 1 33.33 21
.......................................GACCTGTGAAATTCAGTTCTTC..... 38629_1_0_0_0_0_1 OTHER 2 11.76 1 7.14 1 33.33 22
.......................................GAtCTGTGAAATTCAGTTCTTCAG... 2864_2_0_0_0_0_0 OTHER 2 11.76 2 14.29 0 0.00 2T21
..........................................CTGTGAAATTCAGTTCaTCAG... 42899_1_0_0_0_0_1 OTHER 2 11.76 1 7.14 1 33.33 16A4
..........................................CTGTGAAATTCAGTTCTcCAG... 39424_2_0_0_0_0_0 OTHER 2 11.76 2 14.29 0 0.00 17C3
.......................................GACCTGTGAAATTCAGTTgTTCA.... 31041_1_0_0_0_0_0 OTHER 1 5.88 1 7.14 0 0.00 18G4
...........................................TGTGAAATTCAGTTCTTCAa... 31384_1_0_0_0_0_0 OTHER 1 5.88 1 7.14 0 0.00 19
........................GTTATATCAATGTCAGACC....................... 11368_1_0_0_0_0_0 OTHER 1 5.88 1 7.14 0 0.00 19
..........................................CTGTGAAATTCAGTTCTTCAGt.. 25884_1_0_0_0_0_0 OTHER 1 5.88 1 7.14 0 0.00 21
.......................................GACCTGTGAAATTCAaTTCTT...... 31125_1_0_0_0_0_0 OTHER 1 5.88 1 7.14 0 0.00 15A5
.......................................GACCTGTGAAATTCAGTTCa....... 91_1_0_0_0_0_0 OTHER 1 5.88 1 7.14 0 0.00 19
......................................AGACCTGTGAAATTCAGTaCTTCA.... 35034_1_0_0_0_0_0 OTHER 1 5.88 1 7.14 0 0.00 18A5
---------- ---------- ----------
17 14 3
(82.35) (17.65)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 43 99 142 89.31%
OTHER 14 3 17 10.69%
---------- ---------- ----------
57 102 159
[END]