[BEGIN]

REFERENCE HAIRPIN
*******************************************************************************************
ID                 : mmu-mir-145
DESCRIPTION        : mmu-mir-145 MI0000169 Mus musculus miR-145 stem-loop
CHROMOSOME         : 18
SPAN               : 61807479 - 61807548
LENGTH             : 70
SEQUENCE           : CTCACGGTCCAGTTTTCCCAGGAATCCCTTGGATGCTAAGATGGGGATTCCTGGAAATACTGTTCTTGAG
OVERHANG THRESHOLD : 40%
*******************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-145
ACCID      : MI0000169
PARENT     : mmu-mir-145
CHROMOSOME : 18
START      : 61807479
STOP       : 61807548
OFFSET     : 7..29
SEQUENCE   : GTCCAGTTTTCCCAGGAATCCCT
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-145*
ACCID      : MI0000169
PARENT     : mmu-mir-145
CHROMOSOME : 18
START      : 61807479
STOP       : 61807548
OFFSET     : 47..68
SEQUENCE   : ATTCCTGGAAATACTGTTCTTG
STRAND     : -
******************************



*** MATURE ***
______________________________________________________________________
CTCACGGTCCAGTTTTCCCAGGAATCCCTTGGATGCTAAGATGGGGATTCCTGGAAATACTGTTCTTGAG REF                  18                   61807479 - 61807548  
      GTCCAGTTTTCCCAGGAATCCCT                                          MATURE               18                   61807486 - 61807577  mmu-miR-145          -                    
                                              ATTCCTGGAAATACTGTTCTTG   MATURESTAR           18                   61807526 - 61807616  mmu-miR-145*         -                    
______________________________________________________________________

                                                                  -SEQ-                -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....GGTCCAGTTTTCCCAGGAATCCCT..........................................   40831_11_0_0_0_0_14       MATURE           25        33.78           11        34.38           14        33.33                        24   
.....GGTCCAGTTTTCCCAGGAtTCCCT..........................................      8579_5_0_0_0_0_2       MATURE            7         9.46            5        15.62            2         4.76                      18T5   
.....GGTCCAGTTTTCCCAGGAAaCCCT..........................................     41364_3_0_0_0_0_1       MATURE            4         5.41            3         9.38            1         2.38                      19A4   
..........AGTTTTCCCAGGAATCCCT..........................................      5358_0_0_0_0_0_3       MATURE            3         4.05            0         0.00            3         7.14                        19   
.....GGTCCAGTTTTCCCAGGAATCCCTT.........................................     13059_1_0_0_0_0_2       MATURE            3         4.05            1         3.12            2         4.76                        25   
.....GGTCCAGTTTTCCCAGGAAT..............................................      7197_0_0_0_0_0_2       MATURE            2         2.70            0         0.00            2         4.76                        20   
.....GGTCCAGTTTTCCCAGGAATCCCg..........................................     42306_0_0_0_0_0_2       MATURE            2         2.70            0         0.00            2         4.76                        23   
.....GGTCCAGTTTTCCCAGGAATCCCa..........................................     39816_1_0_0_0_0_1       MATURE            2         2.70            1         3.12            1         2.38                        23   
.....GGTCCAGTTTTCCtAGGAATCCCT..........................................     28424_0_0_0_0_0_2       MATURE            2         2.70            0         0.00            2         4.76                     13T10   
.....GGTCCAGTTTTCCCAGGAATCCC...........................................     13977_1_0_0_0_0_1       MATURE            2         2.70            1         3.12            1         2.38                        23   
.....GGTCCAGTTTTCCCAGGAAaCCC...........................................     11079_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      19A3   
.....GGTCCAGTTTTCCCAGGAtTCCC...........................................     10363_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      18T4   
.....GGTCCAGTTTTCCCAGaAATCC............................................     36090_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      16A5   
........CCAGTTTTCCCAGGAATCCCT..........................................     44290_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                        21   
........CCAGTTTTCCCAGGAtTCCCT..........................................      1471_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      15T5   
.....GGTCCAGTTTTCCCAGGAAaCCCTa.........................................     24891_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      19A4   
.....GGTCCAGTTTTCCCAGGAtTCCCc..........................................     38311_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      18T4   
......GTCCAGTTTTCCCAGGAATCCCTTt........................................     32534_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                        24   
.....GGTCCAGTTTTCCCAGGAATCa............................................      7942_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                        21   
....CGGTCCAGTTTTCCCAGGAATCCCT..........................................     13987_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                        25   
.....GGTCCAGTTTTCCCAGGAAcCCCT..........................................      9467_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      19C4   
.TCgCGGTCCAGTTTTCCCAGGA................................................     32019_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      2G19   
.....GGTtCAGTTTTCCCAGGAATCC............................................     37079_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      3T18   
.....GGTCCAGTTTTCCCAtGAATCCCT..........................................     38143_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      15T8   
.....GGTCCAGTTTTCCCAGGAAcCC............................................     37978_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      19C2   
.....GGTCCAGTTTTCCCAGcAATCC............................................     34239_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      16C5   
.TCcCGGTCCAGTTTTCCCAGGA................................................     17343_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      2C19   
.....GGTCCAGTTTTCCCAGGAtTCCCg..........................................     40825_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      18T4   
.....GGTCCAGTTTTCCCAGGAAcCCa...........................................     19239_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      19C2   
.....GGTCCAGTTTTCCCAGGAATCCCc..........................................     24473_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                        23   
.........CAGTTTTCCCAGGAATCCCT..........................................      3664_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                        20   
......GTCCAGTTTTCCCAGGAAT..............................................     24787_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                        19   
                                                                                                             ----------                ----------                ----------   
                                                                                                                     74                        32                        42                                          
                                                                                                                                          (43.24)                   (56.76)                                       




*** MATURESTAR ***
______________________________________________________________________
CTCACGGTCCAGTTTTCCCAGGAATCCCTTGGATGCTAAGATGGGGATTCCTGGAAATACTGTTCTTGAG REF                  18                   61807479 - 61807548  
      GTCCAGTTTTCCCAGGAATCCCT                                          MATURE               18                   61807486 - 61807577  mmu-miR-145          -                    
                                              ATTCCTGGAAATACTGTTCTTG   MATURESTAR           18                   61807526 - 61807616  mmu-miR-145*         -                    
______________________________________________________________________

                                                                  -SEQ-             -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........................................GGGATTCCTGGAAATACTGTTCT.....   5400_0_0_0_0_0_1   MATURESTAR            1       100.00            0            0            1       100.00                        23   
                                                                                                          ----------                ----------                ----------   
                                                                                                                   1                         0                         1                                          
                                                                                                                                        (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              32              42              74          98.67%
     MATURESTAR               0               1               1           1.33%
                     ----------      ----------      ----------                
                             32              43              75                



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