[BEGIN]
REFERENCE HAIRPIN
*******************************************************************************************
ID : mmu-mir-145
DESCRIPTION : mmu-mir-145 MI0000169 Mus musculus miR-145 stem-loop
CHROMOSOME : 18
SPAN : 61807479 - 61807548
LENGTH : 70
SEQUENCE : CTCACGGTCCAGTTTTCCCAGGAATCCCTTGGATGCTAAGATGGGGATTCCTGGAAATACTGTTCTTGAG
OVERHANG THRESHOLD : 40%
*******************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-145
ACCID : MI0000169
PARENT : mmu-mir-145
CHROMOSOME : 18
START : 61807479
STOP : 61807548
OFFSET : 7..29
SEQUENCE : GTCCAGTTTTCCCAGGAATCCCT
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-145*
ACCID : MI0000169
PARENT : mmu-mir-145
CHROMOSOME : 18
START : 61807479
STOP : 61807548
OFFSET : 47..68
SEQUENCE : ATTCCTGGAAATACTGTTCTTG
STRAND : -
******************************
*** MATURE ***
______________________________________________________________________
CTCACGGTCCAGTTTTCCCAGGAATCCCTTGGATGCTAAGATGGGGATTCCTGGAAATACTGTTCTTGAG REF 18 61807479 - 61807548
GTCCAGTTTTCCCAGGAATCCCT MATURE 18 61807486 - 61807577 mmu-miR-145 -
ATTCCTGGAAATACTGTTCTTG MATURESTAR 18 61807526 - 61807616 mmu-miR-145* -
______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....GGTCCAGTTTTCCCAGGAATCCCT.......................................... 40831_11_0_0_0_0_14 MATURE 25 33.78 11 34.38 14 33.33 24
.....GGTCCAGTTTTCCCAGGAtTCCCT.......................................... 8579_5_0_0_0_0_2 MATURE 7 9.46 5 15.62 2 4.76 18T5
.....GGTCCAGTTTTCCCAGGAAaCCCT.......................................... 41364_3_0_0_0_0_1 MATURE 4 5.41 3 9.38 1 2.38 19A4
..........AGTTTTCCCAGGAATCCCT.......................................... 5358_0_0_0_0_0_3 MATURE 3 4.05 0 0.00 3 7.14 19
.....GGTCCAGTTTTCCCAGGAATCCCTT......................................... 13059_1_0_0_0_0_2 MATURE 3 4.05 1 3.12 2 4.76 25
.....GGTCCAGTTTTCCCAGGAAT.............................................. 7197_0_0_0_0_0_2 MATURE 2 2.70 0 0.00 2 4.76 20
.....GGTCCAGTTTTCCCAGGAATCCCg.......................................... 42306_0_0_0_0_0_2 MATURE 2 2.70 0 0.00 2 4.76 23
.....GGTCCAGTTTTCCCAGGAATCCCa.......................................... 39816_1_0_0_0_0_1 MATURE 2 2.70 1 3.12 1 2.38 23
.....GGTCCAGTTTTCCtAGGAATCCCT.......................................... 28424_0_0_0_0_0_2 MATURE 2 2.70 0 0.00 2 4.76 13T10
.....GGTCCAGTTTTCCCAGGAATCCC........................................... 13977_1_0_0_0_0_1 MATURE 2 2.70 1 3.12 1 2.38 23
.....GGTCCAGTTTTCCCAGGAAaCCC........................................... 11079_0_0_0_0_0_1 MATURE 1 1.35 0 0.00 1 2.38 19A3
.....GGTCCAGTTTTCCCAGGAtTCCC........................................... 10363_0_0_0_0_0_1 MATURE 1 1.35 0 0.00 1 2.38 18T4
.....GGTCCAGTTTTCCCAGaAATCC............................................ 36090_1_0_0_0_0_0 MATURE 1 1.35 1 3.12 0 0.00 16A5
........CCAGTTTTCCCAGGAATCCCT.......................................... 44290_0_0_0_0_0_1 MATURE 1 1.35 0 0.00 1 2.38 21
........CCAGTTTTCCCAGGAtTCCCT.......................................... 1471_0_0_0_0_0_1 MATURE 1 1.35 0 0.00 1 2.38 15T5
.....GGTCCAGTTTTCCCAGGAAaCCCTa......................................... 24891_1_0_0_0_0_0 MATURE 1 1.35 1 3.12 0 0.00 19A4
.....GGTCCAGTTTTCCCAGGAtTCCCc.......................................... 38311_1_0_0_0_0_0 MATURE 1 1.35 1 3.12 0 0.00 18T4
......GTCCAGTTTTCCCAGGAATCCCTTt........................................ 32534_0_0_0_0_0_1 MATURE 1 1.35 0 0.00 1 2.38 24
.....GGTCCAGTTTTCCCAGGAATCa............................................ 7942_0_0_0_0_0_1 MATURE 1 1.35 0 0.00 1 2.38 21
....CGGTCCAGTTTTCCCAGGAATCCCT.......................................... 13987_1_0_0_0_0_0 MATURE 1 1.35 1 3.12 0 0.00 25
.....GGTCCAGTTTTCCCAGGAAcCCCT.......................................... 9467_1_0_0_0_0_0 MATURE 1 1.35 1 3.12 0 0.00 19C4
.TCgCGGTCCAGTTTTCCCAGGA................................................ 32019_1_0_0_0_0_0 MATURE 1 1.35 1 3.12 0 0.00 2G19
.....GGTtCAGTTTTCCCAGGAATCC............................................ 37079_1_0_0_0_0_0 MATURE 1 1.35 1 3.12 0 0.00 3T18
.....GGTCCAGTTTTCCCAtGAATCCCT.......................................... 38143_0_0_0_0_0_1 MATURE 1 1.35 0 0.00 1 2.38 15T8
.....GGTCCAGTTTTCCCAGGAAcCC............................................ 37978_0_0_0_0_0_1 MATURE 1 1.35 0 0.00 1 2.38 19C2
.....GGTCCAGTTTTCCCAGcAATCC............................................ 34239_0_0_0_0_0_1 MATURE 1 1.35 0 0.00 1 2.38 16C5
.TCcCGGTCCAGTTTTCCCAGGA................................................ 17343_1_0_0_0_0_0 MATURE 1 1.35 1 3.12 0 0.00 2C19
.....GGTCCAGTTTTCCCAGGAtTCCCg.......................................... 40825_1_0_0_0_0_0 MATURE 1 1.35 1 3.12 0 0.00 18T4
.....GGTCCAGTTTTCCCAGGAAcCCa........................................... 19239_0_0_0_0_0_1 MATURE 1 1.35 0 0.00 1 2.38 19C2
.....GGTCCAGTTTTCCCAGGAATCCCc.......................................... 24473_0_0_0_0_0_1 MATURE 1 1.35 0 0.00 1 2.38 23
.........CAGTTTTCCCAGGAATCCCT.......................................... 3664_0_0_0_0_0_1 MATURE 1 1.35 0 0.00 1 2.38 20
......GTCCAGTTTTCCCAGGAAT.............................................. 24787_1_0_0_0_0_0 MATURE 1 1.35 1 3.12 0 0.00 19
---------- ---------- ----------
74 32 42
(43.24) (56.76)
*** MATURESTAR ***
______________________________________________________________________
CTCACGGTCCAGTTTTCCCAGGAATCCCTTGGATGCTAAGATGGGGATTCCTGGAAATACTGTTCTTGAG REF 18 61807479 - 61807548
GTCCAGTTTTCCCAGGAATCCCT MATURE 18 61807486 - 61807577 mmu-miR-145 -
ATTCCTGGAAATACTGTTCTTG MATURESTAR 18 61807526 - 61807616 mmu-miR-145* -
______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........................................GGGATTCCTGGAAATACTGTTCT..... 5400_0_0_0_0_0_1 MATURESTAR 1 100.00 0 0 1 100.00 23
---------- ---------- ----------
1 0 1
(0.00) (100.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 32 42 74 98.67%
MATURESTAR 0 1 1 1.33%
---------- ---------- ----------
32 43 75
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