[BEGIN]

REFERENCE HAIRPIN
*********************************************************************************************
ID                 : mmu-mir-141
DESCRIPTION        : mmu-mir-141 MI0000166 Mus musculus miR-141 stem-loop
CHROMOSOME         : 6
SPAN               : 124667932 - 124668003
LENGTH             : 72
SEQUENCE           : GGGTCCATCTTCCAGTGCAGTGTTGGATGGTTGAAGTATGAAGCTCCTAACACTGTCTGGTAAAGATGGCCC
OVERHANG THRESHOLD : 40%
*********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-141
ACCID      : MI0000166
PARENT     : mmu-mir-141
CHROMOSOME : 6
START      : 124667932
STOP       : 124668003
OFFSET     : 48..69
SEQUENCE   : TAACACTGTCTGGTAAAGATGG
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-141*
ACCID      : MI0000166
PARENT     : mmu-mir-141
CHROMOSOME : 6
START      : 124667932
STOP       : 124668003
OFFSET     : 6..27
SEQUENCE   : CATCTTCCAGTGCAGTGTTGGA
STRAND     : -
******************************



*** MATURE ***
________________________________________________________________________
GGGTCCATCTTCCAGTGCAGTGTTGGATGGTTGAAGTATGAAGCTCCTAACACTGTCTGGTAAAGATGGCCC REF                  6                    124667932 - 124668003 
                                               TAACACTGTCTGGTAAAGATGG    MATURE               6                    124667980 - 124668072 mmu-miR-141          -                    
     CATCTTCCAGTGCAGTGTTGGA                                              MATURESTAR           6                    124667938 - 124668030 mmu-miR-141*         -                    
________________________________________________________________________

                                                                    -SEQ-                -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............................................TAACACTGTCTGGTAAAGATGt....   42797_14_0_0_0_0_13       MATURE           27        58.70           14        87.50           13        43.33                        21   
................................................AACACTGTCTGGTAAAGATGt....     37550_0_0_0_0_0_6       MATURE            6        13.04            0         0.00            6        20.00                        20   
...............................................TAACACTGTCTGGTAAAGATGG....     29993_0_0_0_0_0_3       MATURE            3         6.52            0         0.00            3        10.00                        22   
...............................................TAACACTGTCTGGTAAAGcTGt....     34819_1_0_0_0_0_0       MATURE            1         2.17            1         6.25            0         0.00                      18C2   
...............................................TAACACTGTCTGGTAAAGATGGCCa.      1053_0_0_0_0_0_1       MATURE            1         2.17            0         0.00            1         3.33                        24   
...............................................TAACACTGTCTGGTAAAGATGGt...     35170_0_0_0_0_0_1       MATURE            1         2.17            0         0.00            1         3.33                        22   
................................................AACACTGTCTGGTAAAGATGaCCCt     21731_0_0_0_0_0_1       MATURE            1         2.17            0         0.00            1         3.33                      20A3   
...............................................TAACACTGTCTGGTAAAcATGG....      8907_0_0_0_0_0_1       MATURE            1         2.17            0         0.00            1         3.33                      17C4   
...............................................TAACACTGTCTGGTAAAGAT......     19995_0_0_0_0_0_1       MATURE            1         2.17            0         0.00            1         3.33                        20   
................................................AACACTGTCTGGTAAAaATGGt...     42142_0_0_0_0_0_1       MATURE            1         2.17            0         0.00            1         3.33                      16A4   
...............................................TAACACTGTCTGGTAAAGATGc....     15481_0_0_0_0_0_1       MATURE            1         2.17            0         0.00            1         3.33                        21   
...............................................TAACACTGTCTGGTAAAGAaGGCt..     31072_1_0_0_0_0_0       MATURE            1         2.17            1         6.25            0         0.00                      19A3   
...............................................TAACACTGTCTGGTAAAaATGt....     36873_0_0_0_0_0_1       MATURE            1         2.17            0         0.00            1         3.33                      17A3   
                                                                                                               ----------                ----------                ----------   
                                                                                                                       46                        16                        30                                          
                                                                                                                                            (34.78)                   (65.22)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              16              30              46         100.00%
                     ----------      ----------      ----------                
                             16              30              46                



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