[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************
ID : mmu-mir-141
DESCRIPTION : mmu-mir-141 MI0000166 Mus musculus miR-141 stem-loop
CHROMOSOME : 6
SPAN : 124667932 - 124668003
LENGTH : 72
SEQUENCE : GGGTCCATCTTCCAGTGCAGTGTTGGATGGTTGAAGTATGAAGCTCCTAACACTGTCTGGTAAAGATGGCCC
OVERHANG THRESHOLD : 40%
*********************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-141
ACCID : MI0000166
PARENT : mmu-mir-141
CHROMOSOME : 6
START : 124667932
STOP : 124668003
OFFSET : 48..69
SEQUENCE : TAACACTGTCTGGTAAAGATGG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-141*
ACCID : MI0000166
PARENT : mmu-mir-141
CHROMOSOME : 6
START : 124667932
STOP : 124668003
OFFSET : 6..27
SEQUENCE : CATCTTCCAGTGCAGTGTTGGA
STRAND : -
******************************
*** MATURE ***
________________________________________________________________________
GGGTCCATCTTCCAGTGCAGTGTTGGATGGTTGAAGTATGAAGCTCCTAACACTGTCTGGTAAAGATGGCCC REF 6 124667932 - 124668003
TAACACTGTCTGGTAAAGATGG MATURE 6 124667980 - 124668072 mmu-miR-141 -
CATCTTCCAGTGCAGTGTTGGA MATURESTAR 6 124667938 - 124668030 mmu-miR-141* -
________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............................................TAACACTGTCTGGTAAAGATGt.... 42797_14_0_0_0_0_13 MATURE 27 58.70 14 87.50 13 43.33 21
................................................AACACTGTCTGGTAAAGATGt.... 37550_0_0_0_0_0_6 MATURE 6 13.04 0 0.00 6 20.00 20
...............................................TAACACTGTCTGGTAAAGATGG.... 29993_0_0_0_0_0_3 MATURE 3 6.52 0 0.00 3 10.00 22
...............................................TAACACTGTCTGGTAAAGcTGt.... 34819_1_0_0_0_0_0 MATURE 1 2.17 1 6.25 0 0.00 18C2
...............................................TAACACTGTCTGGTAAAGATGGCCa. 1053_0_0_0_0_0_1 MATURE 1 2.17 0 0.00 1 3.33 24
...............................................TAACACTGTCTGGTAAAGATGGt... 35170_0_0_0_0_0_1 MATURE 1 2.17 0 0.00 1 3.33 22
................................................AACACTGTCTGGTAAAGATGaCCCt 21731_0_0_0_0_0_1 MATURE 1 2.17 0 0.00 1 3.33 20A3
...............................................TAACACTGTCTGGTAAAcATGG.... 8907_0_0_0_0_0_1 MATURE 1 2.17 0 0.00 1 3.33 17C4
...............................................TAACACTGTCTGGTAAAGAT...... 19995_0_0_0_0_0_1 MATURE 1 2.17 0 0.00 1 3.33 20
................................................AACACTGTCTGGTAAAaATGGt... 42142_0_0_0_0_0_1 MATURE 1 2.17 0 0.00 1 3.33 16A4
...............................................TAACACTGTCTGGTAAAGATGc.... 15481_0_0_0_0_0_1 MATURE 1 2.17 0 0.00 1 3.33 21
...............................................TAACACTGTCTGGTAAAGAaGGCt.. 31072_1_0_0_0_0_0 MATURE 1 2.17 1 6.25 0 0.00 19A3
...............................................TAACACTGTCTGGTAAAaATGt.... 36873_0_0_0_0_0_1 MATURE 1 2.17 0 0.00 1 3.33 17A3
---------- ---------- ----------
46 16 30
(34.78) (65.22)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 16 30 46 100.00%
---------- ---------- ----------
16 30 46
[END]