[BEGIN]

REFERENCE HAIRPIN
************************************************************************************************************************
ID                 : mmu-mir-138-1
DESCRIPTION        : mmu-mir-138-1 MI0000722 Mus musculus miR-138-1 stem-loop
CHROMOSOME         : 9
SPAN               : 122591994 - 122592092
LENGTH             : 99
SEQUENCE           : CTCTAGCATGGTGTTGTGGGACAGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGCCACACTGCACTGCAAG
OVERHANG THRESHOLD : 40%
************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-138
ACCID      : MI0000722
PARENT     : mmu-mir-138-1
CHROMOSOME : 9
START      : 122591994
STOP       : 122592092
OFFSET     : 23..45
SEQUENCE   : AGCTGGTGTTGTGAATCAGGCCG
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-138*
ACCID      : MI0000722
PARENT     : mmu-mir-138-1
CHROMOSOME : 9
START      : 122591994
STOP       : 122592092
OFFSET     : 61..82
SEQUENCE   : CGGCTACTTCACAACACCAGGG
STRAND     : +
******************************



*** MATURE ***
___________________________________________________________________________________________________
CTCTAGCATGGTGTTGTGGGACAGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGCCACACTGCACTGCAAG REF                  9                    122591994 - 122592092 
                      AGCTGGTGTTGTGAATCAGGCCG                                                       MATURE               9                    122592017 - 122592137 mmu-miR-138          +                    
                                                            CGGCTACTTCACAACACCAGGG                  MATURESTAR           9                    122592055 - 122592174 mmu-miR-138*         +                    
___________________________________________________________________________________________________

                                                                                               -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......................AGCTGGTGTTGTGAATCAaGCCG.......................................................   35350_4_0_0_0_0_2       MATURE            6        15.79            4        21.05            2        10.53                      18A4   
......................AGCTGGTGTTGTGAATCAaGCCGT......................................................   32442_2_0_0_0_0_2       MATURE            4        10.53            2        10.53            2        10.53                      18A5   
......................AGCTGGTGTTGTGAATCAGtCCGT......................................................    2264_2_0_0_0_0_1       MATURE            3         7.89            2        10.53            1         5.26                      19T4   
......................AGCTGGTGTTGTGAATCAtGCCG.......................................................   20288_2_0_0_0_0_1       MATURE            3         7.89            2        10.53            1         5.26                      18T4   
.......................GCTGGTGTTGTGAATCAGGCCGTTt....................................................     389_2_0_0_0_0_1       MATURE            3         7.89            2        10.53            1         5.26                        24   
......................AGCTGGTGTTGTGAATCAtGCCGT......................................................   37676_0_0_0_0_0_2       MATURE            2         5.26            0         0.00            2        10.53                      18T5   
......................AGCTGGTGTTGTGAATCAGtCCG.......................................................   12379_0_0_0_0_0_2       MATURE            2         5.26            0         0.00            2        10.53                      19T3   
......................AGCTGGTGTTGTGAATCAGGCCaTT.....................................................   23252_2_0_0_0_0_0       MATURE            2         5.26            2        10.53            0         0.00                      22A2   
......................AGCTGGTGTTGTGAATCAGGCCGTT.....................................................    4073_0_0_0_0_0_1       MATURE            1         2.63            0         0.00            1         5.26                        25   
......................AGCTGGTGTTGTGAATCAGaCCG.......................................................   37103_1_0_0_0_0_0       MATURE            1         2.63            1         5.26            0         0.00                      19A3   
......................AGCTGGTGTTGTGAATCAGaCCGTT.....................................................   24405_1_0_0_0_0_0       MATURE            1         2.63            1         5.26            0         0.00                      19A5   
......................AGCTGGTGTTGTGAATCAGtCCGTa.....................................................   23276_0_0_0_0_0_1       MATURE            1         2.63            0         0.00            1         5.26                      19T4   
......................AGCTGGTGTTGTGAATCAGaCC........................................................   24673_0_0_0_0_0_1       MATURE            1         2.63            0         0.00            1         5.26                      19A2   
......................AGCTGGTGTTGTGAATCAGaCCGT......................................................   11883_0_0_0_0_0_1       MATURE            1         2.63            0         0.00            1         5.26                      19A4   
......................AGCTGGTGTTGTGAATCAGGCCGTa.....................................................   39621_0_0_0_0_0_1       MATURE            1         2.63            0         0.00            1         5.26                        24   
.......................GCTGGTGTTGTGAATaAGGCC........................................................   39716_0_0_0_0_0_1       MATURE            1         2.63            0         0.00            1         5.26                      15A5   
......................AGCTGGTGTTGTGAATCAGaCCt.......................................................   16855_1_0_0_0_0_0       MATURE            1         2.63            1         5.26            0         0.00                      19A2   
......................AGCTGGTGTTGTGAATCAGG..........................................................   33479_1_0_0_0_0_0       MATURE            1         2.63            1         5.26            0         0.00                        20   
......................AGCTGGTGTTGTGAATCAtGCCa.......................................................   19065_0_0_0_0_0_1       MATURE            1         2.63            0         0.00            1         5.26                      18T3   
.......................GCTGGTGTTGTGAATCAGGCCaTTt....................................................   44150_0_0_0_0_0_1       MATURE            1         2.63            0         0.00            1         5.26                      21A2   
......................AGCTGGTGTTGTGAATCAGaCCGTa.....................................................   31455_1_0_0_0_0_0       MATURE            1         2.63            1         5.26            0         0.00                      19A4   
                                                                                                                                        ----------                ----------                ----------   
                                                                                                                                                38                        19                        19                                          
                                                                                                                                                                     (50.00)                   (50.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              19              19              38         100.00%
                     ----------      ----------      ----------                
                             19              19              38                



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