[BEGIN]

REFERENCE HAIRPIN
***************************************************************************************
ID                 : mmu-mir-132
DESCRIPTION        : mmu-mir-132 MI0000158 Mus musculus miR-132 stem-loop
CHROMOSOME         : 11
SPAN               : 74987184 - 74987249
LENGTH             : 66
SEQUENCE           : GGGCAACCGTGGCTTTCGATTGTTACTGTGGGAACCGGAGGTAACAGTCTACAGCCATGGTCGCCC
OVERHANG THRESHOLD : 40%
***************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-132
ACCID      : MI0000158
PARENT     : mmu-mir-132
CHROMOSOME : 11
START      : 74987184
STOP       : 74987249
OFFSET     : 42..63
SEQUENCE   : TAACAGTCTACAGCCATGGTCG
STRAND     : +
******************************



*** MATURE ***
__________________________________________________________________
GGGCAACCGTGGCTTTCGATTGTTACTGTGGGAACCGGAGGTAACAGTCTACAGCCATGGTCGCCC REF                  11                   74987184 - 74987249  
                                         TAACAGTCTACAGCCATGGTCG    MATURE               11                   74987226 - 74987312  mmu-miR-132          +                    
__________________________________________________________________

                                                              -SEQ-               -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
........................................GTAACAGTCTACAGCCATGaTCGt...   35222_2_0_0_0_0_13       MATURE           15        17.24            2        16.67           13        17.33                      19A3   
........................................GTAACAGTCTACAGCCATaGTCGt...    39323_2_0_0_0_0_7       MATURE            9        10.34            2        16.67            7         9.33                      18A4   
........................................GTAACAGTCTACAGCCATGGTCG....    26989_2_0_0_0_0_6       MATURE            8         9.20            2        16.67            6         8.00                        23   
........................................GTAACAGTCTACAGCCATGaTCG....    26497_1_0_0_0_0_7       MATURE            8         9.20            1         8.33            7         9.33                      19A3   
........................................GTAACAGTCTACAGCCATaGTCG....    38868_0_0_0_0_0_7       MATURE            7         8.05            0         0.00            7         9.33                      18A4   
........................................GTAACAGTCTACAGCCATGGTCGt...    39749_1_0_0_0_0_3       MATURE            4         4.60            1         8.33            3         4.00                        23   
........................................GTAACAGTCTACAGCCATGGTCGa...    21709_0_0_0_0_0_2       MATURE            2         2.30            0         0.00            2         2.67                        23   
........................................GTAACAGTCTACAGCCATGGTC.....    19026_0_0_0_0_0_2       MATURE            2         2.30            0         0.00            2         2.67                        22   
........................................GTAACAGTCTACAGCCATaGTCGa...    28645_0_0_0_0_0_2       MATURE            2         2.30            0         0.00            2         2.67                      18A4   
........................................GTAACAGTCTACAGCCATGGaCGt...    35206_1_0_0_0_0_1       MATURE            2         2.30            1         8.33            1         1.33                      20A2   
........................................GTAACAGTCTACAGCCATGGTCt....      589_0_0_0_0_0_2       MATURE            2         2.30            0         0.00            2         2.67                        22   
.......................................GGTAACAGTCTACAGCCATGaTCGt...    34408_0_0_0_0_0_2       MATURE            2         2.30            0         0.00            2         2.67                      20A3   
........................................GTAACAGTCTACAGCCATcGTCGt...    31647_1_0_0_0_0_0       MATURE            1         1.15            1         8.33            0         0.00                      18C4   
..........................................AACAGTCTACAGCCATGaTCGt...     5816_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      17A3   
.......................................GGTAACAGTCTACAGCCAaGGTCG....     7843_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      18A5   
.......................................GGTAACAGTCTACAGCCATa........    32059_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                        19   
........................................GTAACAGTCTACAGCCATGGT......    35336_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                        21   
........................................GTAACAGTCTACAGCCATtGTCGt...    17374_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      18T4   
.......................................GGTAACAGTCTACAGCCATGGTCGt...    34872_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                        24   
........................................GTAACAGTCTACAGCCATaGTCa....    28906_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      18A3   
........................................GTAACAGTCTACAGCCAaGGTCG....    19597_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      17A5   
........................................GTAACAGTCTACAGCCAgGGTC.....    26061_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      17G4   
........................................GTAACAGTCTACAGCCATGaTCGa...    41846_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      19A3   
........................................GTAACAGTCTACAGCCATG........     5474_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                        19   
........................................GTAACAGTCTACAGCCAgGGTCG....    14601_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      17G5   
........................................GTAACAGTCTACAGCCATGGTCGC...     1699_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                        24   
........................................GTAACAGTCTACAGCCATGGaCG....    31417_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      20A2   
.......................................GGTAACAGTCTACAGCCATGGTCa....    34877_1_0_0_0_0_0       MATURE            1         1.15            1         8.33            0         0.00                        23   
........................................GTAACAGTCTACAGCCATGGTCa....    16654_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                        22   
........................................GTAACAGTCTACAGCCATGcTCGa...    44237_1_0_0_0_0_0       MATURE            1         1.15            1         8.33            0         0.00                      19C3   
.........................................TAACAGTCTACAGCCATaGTCGa...     8116_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      17A4   
........................................GTAACAGTCTACAGCCATGcTC.....    31208_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      19C2   
.........................................TAACAGTCTACAGCCATGGTCGC...    18051_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                        23   
........................................GTAACAGTCTACAGCCATGaTCt....    17113_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      19A2   
........................................GTAACAGTCTACAGCCAgGGTt.....    11646_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      17G3   
.......................................GGTAACAGTCTACAGCCATGGaCG....    38736_0_0_0_0_0_1       MATURE            1         1.15            0         0.00            1         1.33                      21A2   
                                                                                                        ----------                ----------                ----------   
                                                                                                                87                        12                        75                                          
                                                                                                                                     (13.79)                   (86.21)                                       




*** OTHER ***
__________________________________________________________________
GGGCAACCGTGGCTTTCGATTGTTACTGTGGGAACCGGAGGTAACAGTCTACAGCCATGGTCGCCC REF                  11                   74987184 - 74987249  
                                         TAACAGTCTACAGCCATGGTCG    MATURE               11                   74987226 - 74987312  mmu-miR-132          +                    
__________________________________________________________________

                                                              -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..GCgACCGTGGCTTTCGATTGTTACT........................................   35194_1_0_0_0_0_3        OTHER            4        57.14            1       100.00            3        50.00                      2G22   
....AACCGTGGCTTTCGATTGTTAa.........................................   43313_0_0_0_0_0_1        OTHER            1        14.29            0         0.00            1        16.67                        21   
.GGCAgCCGTGGCTTTCGATTGTTAC.........................................   13053_0_0_0_0_0_1        OTHER            1        14.29            0         0.00            1        16.67                      4G20   
....AACCGTGGCTTTCGATTGTTA..........................................     608_0_0_0_0_0_1        OTHER            1        14.29            0         0.00            1        16.67                        21   
                                                                                                       ----------                ----------                ----------   
                                                                                                                7                         1                         6                                          
                                                                                                                                    (14.29)                   (85.71)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              12              75              87          92.55%
          OTHER               1               6               7           7.45%
                     ----------      ----------      ----------                
                             13              81              94                



[END]
