[BEGIN]
REFERENCE HAIRPIN
*******************************************************************************************************
ID : mmu-mir-130b
DESCRIPTION : mmu-mir-130b MI0000408 Mus musculus miR-130b stem-loop
CHROMOSOME : 16
SPAN : 17124154 - 17124235
LENGTH : 82
SEQUENCE : GGCTTGTTGGACACTCTTTCCCTGTTGCACTACTGTGGGCCTCTGGGAAGCAGTGCAATGATGAAAGGGCATCTGTCGGGCC
OVERHANG THRESHOLD : 40%
*******************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-130b
ACCID : MI0000408
PARENT : mmu-mir-130b
CHROMOSOME : 16
START : 17124154
STOP : 17124235
OFFSET : 51..72
SEQUENCE : CAGTGCAATGATGAAAGGGCAT
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-130b*
ACCID : MI0000408
PARENT : mmu-mir-130b
CHROMOSOME : 16
START : 17124154
STOP : 17124235
OFFSET : 13..34
SEQUENCE : ACTCTTTCCCTGTTGCACTACT
STRAND : -
******************************
*** MATURE ***
__________________________________________________________________________________
GGCTTGTTGGACACTCTTTCCCTGTTGCACTACTGTGGGCCTCTGGGAAGCAGTGCAATGATGAAAGGGCATCTGTCGGGCC REF 16 17124154 - 17124235
CAGTGCAATGATGAAAGGGCAT MATURE 16 17124205 - 17124307 mmu-miR-130b -
ACTCTTTCCCTGTTGCACTACT MATURESTAR 16 17124167 - 17124269 mmu-miR-130b* -
__________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................................................GCAGTGCAATGATGAAAGaGCAT........... 29723_15_0_0_0_0_4 MATURE 19 10.50 15 23.81 4 3.39 18A4
.................................................GCAGTGCAATGATGAAAGGaCAT........... 44020_10_0_0_0_0_7 MATURE 17 9.39 10 15.87 7 5.93 19A3
.................................................GCAGTGCAATGATGAAAaGGCAT........... 32805_9_0_0_0_0_3 MATURE 12 6.63 9 14.29 3 2.54 17A5
.................................................GCAGTGCAATGATGAAAGaGCAa........... 37792_2_0_0_0_0_8 MATURE 10 5.52 2 3.17 8 6.78 18A3
.................................................GCAGTGCAATGATGAAAGGaCAa........... 38281_0_0_0_0_0_6 MATURE 6 3.31 0 0.00 6 5.08 19A2
.................................................GCAGTGCAATGATGAAAGGG.............. 39669_1_0_0_0_0_4 MATURE 5 2.76 1 1.59 4 3.39 20
.................................................GCAGTGCAATGATGAAAGaGC............. 27893_1_0_0_0_0_4 MATURE 5 2.76 1 1.59 4 3.39 18A2
.................................................GCAGTGCAATGATGAAAGGGC............. 23797_1_0_0_0_0_4 MATURE 5 2.76 1 1.59 4 3.39 21
.................................................GCAGTGCAATGATGAAAaGGC............. 41598_0_0_0_0_0_5 MATURE 5 2.76 0 0.00 5 4.24 17A3
...................................................AGTGCAATGATGAAAGGaCAT........... 30749_0_0_0_0_0_4 MATURE 4 2.21 0 0.00 4 3.39 17A3
.................................................GCAGTGCAATGATGAtAGGGC............. 23_0_0_0_0_0_3 MATURE 3 1.66 0 0.00 3 2.54 15T5
..................................................CAGTGCAATGATGAAAaGGCAT........... 42984_1_0_0_0_0_2 MATURE 3 1.66 1 1.59 2 1.69 16A5
.................................................GCAGTGCAATGATGAAAGaGCATt.......... 26678_0_0_0_0_0_3 MATURE 3 1.66 0 0.00 3 2.54 18A4
.................................................GCAGTGCAATGATGAAAGaGCA............ 21985_0_0_0_0_0_3 MATURE 3 1.66 0 0.00 3 2.54 18A3
.................................................GCAGTGCAATGATGAAAGtGCAT........... 22041_2_0_0_0_0_1 MATURE 3 1.66 2 3.17 1 0.85 18T4
.................................................GCAGTGCAATGATGAAAGGaCATa.......... 22465_0_0_0_0_0_3 MATURE 3 1.66 0 0.00 3 2.54 19A3
.................................................GCAGTGCAATGATGAAAGGaCA............ 41001_1_0_0_0_0_2 MATURE 3 1.66 1 1.59 2 1.69 19A2
.................................................GCAGTGCAATGATGAAAGGGCt............ 41189_0_0_0_0_0_2 MATURE 2 1.10 0 0.00 2 1.69 21
.................................................GCAGTGCAATGATGAAAaGGCAa........... 33576_0_0_0_0_0_2 MATURE 2 1.10 0 0.00 2 1.69 17A4
..................................................CAGTGCAATGATGAAAGaGCAa........... 29837_0_0_0_0_0_2 MATURE 2 1.10 0 0.00 2 1.69 17A3
..................................................CAGTGCAATGATGAAAGGGCATCTt........ 568_0_0_0_0_0_2 MATURE 2 1.10 0 0.00 2 1.69 24
...................................................AGTGCAATGATGAAAGaGCATt.......... 36587_2_0_0_0_0_0 MATURE 2 1.10 2 3.17 0 0.00 16A4
.................................................GCAGTGCAATGATGAAAGtGCAa........... 28461_0_0_0_0_0_2 MATURE 2 1.10 0 0.00 2 1.69 18T3
..................................................CAGTGCAATGATGAAAGGG.............. 29577_0_0_0_0_0_2 MATURE 2 1.10 0 0.00 2 1.69 19
.................................................GCAGTGCAATGATGAAAtGGCA............ 1737_0_0_0_0_0_2 MATURE 2 1.10 0 0.00 2 1.69 17T4
.................................................GCAGTGCAATGATGAAAaGGCA............ 37843_0_0_0_0_0_2 MATURE 2 1.10 0 0.00 2 1.69 17A4
..................................................CAGTGCAATGATGAAAGGaCATg.......... 40374_1_0_0_0_0_1 MATURE 2 1.10 1 1.59 1 0.85 18A3
..................................................CAGTGCAATGATGAAAGGaCATt.......... 15515_0_0_0_0_0_2 MATURE 2 1.10 0 0.00 2 1.69 18A3
..................................................CAGTGCAATGATGAAAGGGCA............ 27272_1_0_0_0_0_1 MATURE 2 1.10 1 1.59 1 0.85 21
...................................................AGTGCAATGATGAAAGtGCATa.......... 36561_1_0_0_0_0_1 MATURE 2 1.10 1 1.59 1 0.85 16T4
...................................................AGTGCAATGATGAAAGGGCATCT......... 19609_1_0_0_0_0_1 MATURE 2 1.10 1 1.59 1 0.85 23
..................................................CAGTGCAATGATGAAAGGGC............. 19832_1_0_0_0_0_1 MATURE 2 1.10 1 1.59 1 0.85 20
.................................................GCAGTGCAATGATGAAAGtGC............. 32599_0_0_0_0_0_2 MATURE 2 1.10 0 0.00 2 1.69 18T2
.................................................GCAGTGCAATGATGAAAGGaCATC.......... 3925_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 19A4
.................................................GCAGTGCAATGATGAAAGGtCA............ 15784_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 19T2
.................................................GCAGTGCAATGATGAAAGGtCATt.......... 15995_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 19T3
.................................................GCAGTGCAATGATGAAAcGGCA............ 17665_1_0_0_0_0_0 MATURE 1 0.55 1 1.59 0 0.00 17C4
...................................................AGTGCAATGATGAAAGGGC............. 20172_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 19
..................................................CAGTGCAATGATGAAAGGGCAaCTG........ 25574_1_0_0_0_0_0 MATURE 1 0.55 1 1.59 0 0.00 21A3
..................................................CAGTGCAATGATGAAAGGaCAc........... 12597_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 18A2
...................................................AGTGCAATGATGAAAGGGCAT........... 42854_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 21
...................................................AGTGCAATGATGAAAaGGCAT........... 20682_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 15A5
..................................................CAGTGCAATGATGAAAGaGCATa.......... 11880_1_0_0_0_0_0 MATURE 1 0.55 1 1.59 0 0.00 17A4
.................................................GCAGTGCAATGATGAAAtGGCc............ 35401_1_0_0_0_0_0 MATURE 1 0.55 1 1.59 0 0.00 17T3
.................................................GCAGTGCAATGATGAAAGGtCAT........... 37226_1_0_0_0_0_0 MATURE 1 0.55 1 1.59 0 0.00 19T3
...................................................AGTGCAATGATGAAAtGGCAT........... 12772_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 15T5
.................................................GCAGTGCAATGATGAAAGGGCA............ 12561_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 22
.................................................GCAGTGCAATGATGAAAGGcCA............ 1248_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 19C2
.................................................GCAGTGCAATGATGAAAGGt.............. 15590_1_0_0_0_0_0 MATURE 1 0.55 1 1.59 0 0.00 19
...................................................AGTGCAATGATGAAAGGGCATCTt........ 17743_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 23
.................................................GCAGTGCAATGATGAcAGGGC............. 4324_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 15C5
.................................................GCAGTGCAATGATGAAAtGGC............. 9758_1_0_0_0_0_0 MATURE 1 0.55 1 1.59 0 0.00 17T3
.................................................GCAGTGCAATGATGAAAcGGC............. 39206_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 17C3
.................................................GCAGTGCAATGATGAAAGtGCAg........... 43066_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 18T3
...................................................AGTGtAATGATGAAAGGGCAT........... 12480_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 4T16
...................................................AGTGCAATGATGAAAGtGCATt.......... 6360_1_0_0_0_0_0 MATURE 1 0.55 1 1.59 0 0.00 16T4
.................................................GCAGTGCAATGATGAAAGcGC............. 33224_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 18C2
.................................................GCAGTGCAATGATGAAAGcGCAT........... 40266_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 18C4
.................................................GCAGTGCAATGATGAAAcGGCAg........... 41631_1_0_0_0_0_0 MATURE 1 0.55 1 1.59 0 0.00 17C4
.................................................GCAGTGCAATGATGAAAGGGa............. 28553_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 20
..................................................CAGTGCAATGATGAAAGGGaATCg......... 20083_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 19A3
...................................................AGTGCAATGATGAAAGGGCATCc......... 11307_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 22
................................................AGCAGTGCAATGATGAAAGaGC............. 21812_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 19A2
...................................................AGTGCAATGATGAAAGaGCAT........... 30883_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 16A4
................................................AGCAGTGCAATGATGAAAGaGCAT........... 19951_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 19A4
................................................AGCAGTGCAATGATGAAAGa............... 27394_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 19
..................................................CAGTGCAATGATGAAAGGaCAT........... 30683_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 18A3
...................................................AGTGCAATGATGAAAGGGCATtTG........ 12077_1_0_0_0_0_0 MATURE 1 0.55 1 1.59 0 0.00 21T2
....................................................GTGCAATGATGAAAGGGCAaCT......... 2260_1_0_0_0_0_0 MATURE 1 0.55 1 1.59 0 0.00 19A2
...................................................AGTGCAATGATGAAAGGGCATa.......... 8756_1_0_0_0_0_0 MATURE 1 0.55 1 1.59 0 0.00 21
..................................................CAGTGCAATGATGAAAGGGCATCTa........ 18586_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 24
..................................................CAGTGCAATGATGAAAGGaCAa........... 11939_0_0_0_0_0_1 MATURE 1 0.55 0 0.00 1 0.85 18A2
...................................................AGTGCAATGATGAAAGcGCATa.......... 23230_1_0_0_0_0_0 MATURE 1 0.55 1 1.59 0 0.00 16C4
---------- ---------- ----------
181 63 118
(34.81) (65.19)
*** MATURESTAR ***
__________________________________________________________________________________
GGCTTGTTGGACACTCTTTCCCTGTTGCACTACTGTGGGCCTCTGGGAAGCAGTGCAATGATGAAAGGGCATCTGTCGGGCC REF 16 17124154 - 17124235
CAGTGCAATGATGAAAGGGCAT MATURE 16 17124205 - 17124307 mmu-miR-130b -
ACTCTTTCCCTGTTGCACTACT MATURESTAR 16 17124167 - 17124269 mmu-miR-130b* -
__________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............ACTCTTTCCCTGTTGCACTAC.................................................. 4141_34_0_0_0_0_31 MATURESTAR 65 25.00 34 25.76 31 24.22 21
............ACTCTTTCCCTGTTGCACTACT................................................. 20809_15_0_0_0_0_26 MATURESTAR 41 15.77 15 11.36 26 20.31 22
............ACTCTTTCCCTGTTGCACTA................................................... 12197_12_0_0_0_0_10 MATURESTAR 22 8.46 12 9.09 10 7.81 20
............ACTCTTTCCCTGTTGCACTAt.................................................. 30436_13_0_0_0_0_7 MATURESTAR 20 7.69 13 9.85 7 5.47 20
............ACTCTTTCCCTGTTGCcCTACT................................................. 41514_5_0_0_0_0_4 MATURESTAR 9 3.46 5 3.79 4 3.12 16C5
............ACTCTTTCCCTGTTGCACTAa.................................................. 29372_4_0_0_0_0_4 MATURESTAR 8 3.08 4 3.03 4 3.12 20
............ACTCTTTCCCTGTTGCtCTACT................................................. 24266_4_0_0_0_0_4 MATURESTAR 8 3.08 4 3.03 4 3.12 16T5
............ACTCTTTCCCTGTTGCACTACTa................................................ 25307_2_0_0_0_0_5 MATURESTAR 7 2.69 2 1.52 5 3.91 22
............ACTCTTTCCCTGTTGCACTACTt................................................ 38401_6_0_0_0_0_1 MATURESTAR 7 2.69 6 4.55 1 0.78 22
............ACTCTTTCCCTGTTGgACTAC.................................................. 8106_5_0_0_0_0_1 MATURESTAR 6 2.31 5 3.79 1 0.78 15G5
............ACTCTTTCCCTGTTGCACcACT................................................. 41239_1_0_0_0_0_5 MATURESTAR 6 2.31 1 0.76 5 3.91 18C3
............ACTCTTTCCCTGTTGaACTAC.................................................. 15891_4_0_0_0_0_2 MATURESTAR 6 2.31 4 3.03 2 1.56 15A5
............ACTCTTTCCCTGTTGCACTACa................................................. 26968_2_0_0_0_0_3 MATURESTAR 5 1.92 2 1.52 3 2.34 21
............ACTCTTTCCCTGTTGCACTACc................................................. 31169_3_0_0_0_0_2 MATURESTAR 5 1.92 3 2.27 2 1.56 21
............ACTCTTTCCCTGTTGCgCTAC.................................................. 23244_1_0_0_0_0_3 MATURESTAR 4 1.54 1 0.76 3 2.34 16G4
............ACTCTTTCCCTGTTGCACTcCT................................................. 11115_1_0_0_0_0_3 MATURESTAR 4 1.54 1 0.76 3 2.34 19C2
............ACTCTTTCCCTGTTGCACTgCT................................................. 20190_2_0_0_0_0_1 MATURESTAR 3 1.15 2 1.52 1 0.78 19G2
............ACTCTTTCCCTGTTGCACaACT................................................. 43257_1_0_0_0_0_2 MATURESTAR 3 1.15 1 0.76 2 1.56 18A3
............ACTCTTTCCCTGTTGCAtTACT................................................. 44238_2_0_0_0_0_1 MATURESTAR 3 1.15 2 1.52 1 0.78 17T4
...........CACTCTTTCCCTGTTGCACTAC.................................................. 6797_1_0_0_0_0_1 MATURESTAR 2 0.77 1 0.76 1 0.78 22
............ACTCTTTCCCTGTTGCgCTACT................................................. 4794_0_0_0_0_0_2 MATURESTAR 2 0.77 0 0.00 2 1.56 16G5
............ACTCTTTCCCTGTTGCACaAC.................................................. 12081_2_0_0_0_0_0 MATURESTAR 2 0.77 2 1.52 0 0.00 18A2
............ACTCTTTCCCTGTTGCtCTAC.................................................. 37532_1_0_0_0_0_0 MATURESTAR 1 0.38 1 0.76 0 0.00 16T4
............ACTCTTTCCCTGTTGCACTAg.................................................. 24531_1_0_0_0_0_0 MATURESTAR 1 0.38 1 0.76 0 0.00 20
...........CACTCTTTCCCTGTTGtACTAC.................................................. 14031_1_0_0_0_0_0 MATURESTAR 1 0.38 1 0.76 0 0.00 16T5
...........CACTCTTTCCCTGTTGaACTAC.................................................. 16606_0_0_0_0_0_1 MATURESTAR 1 0.38 0 0.00 1 0.78 16A5
............ACTCTTTCCCTGTTGCACcACTGa............................................... 15561_1_0_0_0_0_0 MATURESTAR 1 0.38 1 0.76 0 0.00 18C4
............ACTCTTTCCCTGTTGCACTtCT................................................. 34649_0_0_0_0_0_1 MATURESTAR 1 0.38 0 0.00 1 0.78 19T2
............ACTCTTTCCCTGTTGCACTg................................................... 12232_1_0_0_0_0_0 MATURESTAR 1 0.38 1 0.76 0 0.00 19
............ACTCTTTCCCTGTTGCACTgCTa................................................ 26967_0_0_0_0_0_1 MATURESTAR 1 0.38 0 0.00 1 0.78 19G2
............ACTCTTTCCCTGTTGCAgTACT................................................. 1090_0_0_0_0_0_1 MATURESTAR 1 0.38 0 0.00 1 0.78 17G4
............ACTCTTTCCCTGTTGCAaTACT................................................. 15929_1_0_0_0_0_0 MATURESTAR 1 0.38 1 0.76 0 0.00 17A4
............ACTCTTTCCCTGTTGCAaTAC.................................................. 37990_1_0_0_0_0_0 MATURESTAR 1 0.38 1 0.76 0 0.00 17A3
............ACTCTTTCCCTGTTGCAgTAC.................................................. 28550_0_0_0_0_0_1 MATURESTAR 1 0.38 0 0.00 1 0.78 17G3
............ACTCTTTCCCTGTTGCAaTACa................................................. 7558_0_0_0_0_0_1 MATURESTAR 1 0.38 0 0.00 1 0.78 17A3
............ACTCTTTCCCTGTTGtACTAC.................................................. 42280_1_0_0_0_0_0 MATURESTAR 1 0.38 1 0.76 0 0.00 15T5
............ACTCTTTCCCTGTTGCcCTACg................................................. 41421_0_0_0_0_0_1 MATURESTAR 1 0.38 0 0.00 1 0.78 16C4
............ACTCTTTCCCTGTTGCACcACc................................................. 2308_0_0_0_0_0_1 MATURESTAR 1 0.38 0 0.00 1 0.78 18C2
............ACTCTTTCCCTGTTGCACcAC.................................................. 14329_0_0_0_0_0_1 MATURESTAR 1 0.38 0 0.00 1 0.78 18C2
............ACTCTTTCCCTGTTGCACTt................................................... 15886_1_0_0_0_0_0 MATURESTAR 1 0.38 1 0.76 0 0.00 19
............ACTCTTTCCCTGTTGCACcACTa................................................ 10444_1_0_0_0_0_0 MATURESTAR 1 0.38 1 0.76 0 0.00 18C3
..........ACACTCTTTCCCTGTTGCACTACTa................................................ 43807_1_0_0_0_0_0 MATURESTAR 1 0.38 1 0.76 0 0.00 24
............ACTCTTTCCCTGcTGCACTAC.................................................. 20091_1_0_0_0_0_0 MATURESTAR 1 0.38 1 0.76 0 0.00 12C8
............ACTCTTTCCCTGTTGCACTACTG................................................ 38338_0_0_0_0_0_1 MATURESTAR 1 0.38 0 0.00 1 0.78 23
---------- ---------- ----------
260 132 128
(50.77) (49.23)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 63 118 181 41.04%
MATURESTAR 132 128 260 58.96%
---------- ---------- ----------
195 246 441
[END]