[BEGIN]

REFERENCE HAIRPIN
***************************************************************************************************************
ID                 : mmu-mir-129-2
DESCRIPTION        : mmu-mir-129-2 MI0000585 Mus musculus miR-129-2 stem-loop
CHROMOSOME         : 2
SPAN               : 94081521 - 94081610
LENGTH             : 90
SEQUENCE           : TGCCTTTCGCGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCG
OVERHANG THRESHOLD : 40%
***************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-129-3p
ACCID      : MI0000585
PARENT     : mmu-mir-129-2
CHROMOSOME : 2
START      : 94081521
STOP       : 94081610
OFFSET     : 57..78
SEQUENCE   : AAGCCCTTACCCCAAAAAGCAT
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-129-5p
ACCID      : MI0000585
PARENT     : mmu-mir-129-2
CHROMOSOME : 2
START      : 94081521
STOP       : 94081610
OFFSET     : 15..35
SEQUENCE   : CTTTTTGCGGTCTGGGCTTGC
STRAND     : -
******************************



*** MATURE-3P ***
__________________________________________________________________________________________
TGCCTTTCGCGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCG REF                  2                    94081521 - 94081610  
                                                        AAGCCCTTACCCCAAAAAGCAT             MATURE-3P            2                    94081578 - 94081688  mmu-miR-129-3p       -                    
              CTTTTTGCGGTCTGGGCTTGC                                                        MATURE-5P            2                    94081536 - 94081645  mmu-miR-129-5p       -                    
__________________________________________________________________________________________

                                                                                      -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....................................................CGGAAGCCCTTACCCCAAAAAGCAT.............   27750_0_0_0_0_0_1    MATURE-3P            1        50.00            0            0            1        50.00                        25   
.....................................................CGGAAGCCCTTACCCCAAAAAaCAT.............   20028_0_0_0_0_0_1    MATURE-3P            1        50.00            0            0            1        50.00                      21A3   
                                                                                                                               ----------                ----------                ----------   
                                                                                                                                        2                         0                         2                                          
                                                                                                                                                             (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               0               2               2         100.00%
                     ----------      ----------      ----------                
                              0               2               2                



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