[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************
ID                 : mmu-mir-126
DESCRIPTION        : mmu-mir-126 MI0000153 Mus musculus miR-126 stem-loop
CHROMOSOME         : 2
SPAN               : 26446877 - 26446949
LENGTH             : 73
SEQUENCE           : TGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCA
OVERHANG THRESHOLD : 40%
**********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-126-3p
ACCID      : MI0000153
PARENT     : mmu-mir-126
CHROMOSOME : 2
START      : 26446877
STOP       : 26446949
OFFSET     : 46..67
SEQUENCE   : TCGTACCGTGAGTAATAATGCG
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-126-5p
ACCID      : MI0000153
PARENT     : mmu-mir-126
CHROMOSOME : 2
START      : 26446877
STOP       : 26446949
OFFSET     : 9..29
SEQUENCE   : CATTATTACTTTTGGTACGCG
STRAND     : +
******************************



*** MATURE-3P ***
_________________________________________________________________________
TGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCA REF                  2                    26446877 - 26446949  
                                             TCGTACCGTGAGTAATAATGCG       MATURE-3P            2                    26446923 - 26447016  mmu-miR-126-3p       +                    
        CATTATTACTTTTGGTACGCG                                             MATURE-5P            2                    26446886 - 26446978  mmu-miR-126-5p       +                    
_________________________________________________________________________

                                                                     -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............................................TCGTACCGTGAGTAATAATGCG.......   31704_1_0_0_0_0_1    MATURE-3P            2        18.18            1        14.29            1        25.00                        22   
.............................................TCGTACCGTGAGTAATAcTGCGt......   17575_1_0_0_0_0_0    MATURE-3P            1         9.09            1        14.29            0         0.00                      17C4   
.............................................TCGTACCGTGAGTAATAATGCa.......    2667_0_0_0_0_0_1    MATURE-3P            1         9.09            0         0.00            1        25.00                        21   
.............................................TCGTACCGTGAGTAATAATG.........   39198_1_0_0_0_0_0    MATURE-3P            1         9.09            1        14.29            0         0.00                        20   
.............................................TCGTACCGTGAGTAATAcTGCGC......   25009_1_0_0_0_0_0    MATURE-3P            1         9.09            1        14.29            0         0.00                      17C5   
.............................................TCGTACCGTGAGTAATAATGt........    8051_1_0_0_0_0_0    MATURE-3P            1         9.09            1        14.29            0         0.00                        20   
.............................................TCGTACCGTGAGTAATgATGCG.......    5077_0_0_0_0_0_1    MATURE-3P            1         9.09            0         0.00            1        25.00                      16G5   
.............................................TCGTACCGTGAGTAAcAATGC........   29930_0_0_0_0_0_1    MATURE-3P            1         9.09            0         0.00            1        25.00                      15C5   
..............................................CGTACCGTGAGTAATAATaCGa......   38203_1_0_0_0_0_0    MATURE-3P            1         9.09            1        14.29            0         0.00                      18A2   
............................................CTCGTACCGTGAGTAATAATGCGa......   11206_1_0_0_0_0_0    MATURE-3P            1         9.09            1        14.29            0         0.00                        23   
                                                                                                              ----------                ----------                ----------   
                                                                                                                      11                         7                         4                                          
                                                                                                                                           (63.64)                   (36.36)                                       




*** MATURE-5P ***
_________________________________________________________________________
TGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCA REF                  2                    26446877 - 26446949  
                                             TCGTACCGTGAGTAATAATGCG       MATURE-3P            2                    26446923 - 26447016  mmu-miR-126-3p       +                    
        CATTATTACTTTTGGTACGCG                                             MATURE-5P            2                    26446886 - 26446978  mmu-miR-126-5p       +                    
_________________________________________________________________________

                                                                     -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....GCgCATTATTACTTTTGGTACGCG.............................................   17362_2_0_0_0_0_4    MATURE-5P            6        66.67            2        40.00            4       100.00                      2G21   
.....GCgCATTATTACTTTTGGTACGCa.............................................   38128_1_0_0_0_0_0    MATURE-5P            1        11.11            1        20.00            0         0.00                      2G20   
.....GCgCATTATTACTTTTGGTACGCGg............................................   27004_1_0_0_0_0_0    MATURE-5P            1        11.11            1        20.00            0         0.00                      2G21   
........CATTATTACTTTTGGTACGCGCa...........................................   22574_1_0_0_0_0_0    MATURE-5P            1        11.11            1        20.00            0         0.00                        22   
                                                                                                              ----------                ----------                ----------   
                                                                                                                       9                         5                         4                                          
                                                                                                                                           (55.56)                   (44.44)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               7               4              11          55.00%
      MATURE-5P               5               4               9          45.00%
                     ----------      ----------      ----------                
                             12               8              20                



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