[BEGIN]
REFERENCE HAIRPIN
**************************************************************************************************
ID : mmu-mir-125b-1
DESCRIPTION : mmu-mir-125b-1 MI0000725 Mus musculus miR-125b-1 stem-loop
CHROMOSOME : 9
SPAN : 41390009 - 41390085
LENGTH : 77
SEQUENCE : TGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTG
OVERHANG THRESHOLD : 40%
**************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-125b-3p
ACCID : MI0000725
PARENT : mmu-mir-125b-1
CHROMOSOME : 9
START : 41390009
STOP : 41390085
OFFSET : 55..76
SEQUENCE : ACGGGTTAGGCTCTTGGGAGCT
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-125b-5p
ACCID : MI0000725
PARENT : mmu-mir-125b-1
CHROMOSOME : 9
START : 41390009
STOP : 41390085
OFFSET : 15..36
SEQUENCE : TCCCTGAGACCCTAACTTGTGA
STRAND : +
******************************
*** MATURE-5P ***
_____________________________________________________________________________
TGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTG REF 9 41390009 - 41390085
ACGGGTTAGGCTCTTGGGAGCT MATURE-3P 9 41390064 - 41390161 mmu-miR-125b-3p +
TCCCTGAGACCCTAACTTGTGA MATURE-5P 9 41390024 - 41390121 mmu-miR-125b-5p +
_____________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............GTCCCTGAGACCCTAACTTGTGAa......................................... 33551_4_0_0_0_0_2 MATURE-5P 6 24.00 4 22.22 2 28.57 23
.............GTCCCTGAGACCCTAACTTGTGA.......................................... 39378_4_0_0_0_0_1 MATURE-5P 5 20.00 4 22.22 1 14.29 23
.............GTCCCTGAGACCCTAACTTaTGA.......................................... 13442_0_0_0_0_0_2 MATURE-5P 2 8.00 0 0.00 2 28.57 19A3
.............GTCCCTGAGACCCTAACaTGTGA.......................................... 7068_2_0_0_0_0_0 MATURE-5P 2 8.00 2 11.11 0 0.00 17A5
............AGTCCCTGAGACCCTAACTTGTGAa......................................... 338_1_0_0_0_0_0 MATURE-5P 1 4.00 1 5.56 0 0.00 24
.............GTCCCTGAGACCCTAACTcGTGAa......................................... 15304_1_0_0_0_0_0 MATURE-5P 1 4.00 1 5.56 0 0.00 18C4
............AGTCCCTGAGACCCTAACTTaTGAa......................................... 1226_0_0_0_0_0_1 MATURE-5P 1 4.00 0 0.00 1 14.29 20A3
.............GTCCCTGAGACCCTAACTTaTGAa......................................... 33571_1_0_0_0_0_0 MATURE-5P 1 4.00 1 5.56 0 0.00 19A3
.............GTCCCTGAGACCCTAACTTaTG........................................... 36176_0_0_0_0_0_1 MATURE-5P 1 4.00 0 0.00 1 14.29 19A2
.............GTCCCTGAGACCCTAACcTGTGt.......................................... 27960_1_0_0_0_0_0 MATURE-5P 1 4.00 1 5.56 0 0.00 17C4
.............GTCCCTGAGACCCTAACgTGTGA.......................................... 39030_1_0_0_0_0_0 MATURE-5P 1 4.00 1 5.56 0 0.00 17G5
..............TCCCTGAGACCCTAACTTGTGAT......................................... 13715_1_0_0_0_0_0 MATURE-5P 1 4.00 1 5.56 0 0.00 23
.............GTCCCTGAGACCCTAACTcGTGA.......................................... 36308_1_0_0_0_0_0 MATURE-5P 1 4.00 1 5.56 0 0.00 18C4
.............GTCCCTGAGACCCTAACTTGTa........................................... 29894_1_0_0_0_0_0 MATURE-5P 1 4.00 1 5.56 0 0.00 21
---------- ---------- ----------
25 18 7
(72.00) (28.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-5P 18 7 25 100.00%
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18 7 25
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