[BEGIN]
REFERENCE HAIRPIN
*****************************************************************************************
ID : mmu-mir-125a
DESCRIPTION : mmu-mir-125a MI0000151 Mus musculus miR-125a stem-loop
CHROMOSOME : 17
SPAN : 17967776 - 17967843
LENGTH : 68
SEQUENCE : CTGGGTCCCTGAGACCCTTTAACCTGTGAGGACGTCCAGGGTCACAGGTGAGGTTCTTGGGAGCCTGG
OVERHANG THRESHOLD : 40%
*****************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-125a-3p
ACCID : MI0000151
PARENT : mmu-mir-125a
CHROMOSOME : 17
START : 17967776
STOP : 17967843
OFFSET : 44..65
SEQUENCE : ACAGGTGAGGTTCTTGGGAGCC
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-125a-5p
ACCID : MI0000151
PARENT : mmu-mir-125a
CHROMOSOME : 17
START : 17967776
STOP : 17967843
OFFSET : 6..29
SEQUENCE : TCCCTGAGACCCTTTAACCTGTGA
STRAND : +
******************************
*** MATURE-5P ***
____________________________________________________________________
CTGGGTCCCTGAGACCCTTTAACCTGTGAGGACGTCCAGGGTCACAGGTGAGGTTCTTGGGAGCCTGG REF 17 17967776 - 17967843
ACAGGTGAGGTTCTTGGGAGCC MATURE-3P 17 17967820 - 17967908 mmu-miR-125a-3p +
TCCCTGAGACCCTTTAACCTGTGA MATURE-5P 17 17967782 - 17967872 mmu-miR-125a-5p +
____________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....GTCCCTGAGACCCTTTAACCTGT.......................................... 37604_38_0_0_0_0_49 MATURE-5P 87 24.44 38 23.17 49 25.52 23
....GTCCCTGAGACCCTTTAcCCTGT.......................................... 42355_14_0_0_0_0_13 MATURE-5P 27 7.58 14 8.54 13 6.77 17C5
....GTCCCTGAGACCCTTTAACCTGTa......................................... 30850_6_0_0_0_0_20 MATURE-5P 26 7.30 6 3.66 20 10.42 23
....GTCCCTGAGACCCTTTAACCTGTGA........................................ 31221_12_0_0_0_0_9 MATURE-5P 21 5.90 12 7.32 9 4.69 25
....GTCCCTGAGACCCTTTAACCTGTGt........................................ 16325_8_0_0_0_0_8 MATURE-5P 16 4.49 8 4.88 8 4.17 24
....GTCCCTGAGACCCTTTAtCCTGT.......................................... 44069_8_0_0_0_0_7 MATURE-5P 15 4.21 8 4.88 7 3.65 17T5
....GTCCCTGAGACCCTTTAACCTGa.......................................... 40840_3_0_0_0_0_9 MATURE-5P 12 3.37 3 1.83 9 4.69 22
....GTCCCTGAGACCCTTTAACCTGTt......................................... 38005_8_0_0_0_0_3 MATURE-5P 11 3.09 8 4.88 3 1.56 23
...GGTCCCTGAGACCCTTTAACCTGT.......................................... 23183_3_0_0_0_0_5 MATURE-5P 8 2.25 3 1.83 5 2.60 24
....GTCCCTGAGACCCTTTAgCCTGT.......................................... 40989_2_0_0_0_0_6 MATURE-5P 8 2.25 2 1.22 6 3.12 17G5
....GTCCCTGAGACCCTTTAACCTGc.......................................... 41893_5_0_0_0_0_2 MATURE-5P 7 1.97 5 3.05 2 1.04 22
....GTCCCTGAGACCCTTTAACCTaTGA........................................ 38973_2_0_0_0_0_5 MATURE-5P 7 1.97 2 1.22 5 2.60 21A3
....GTCCCTGAGACCCTTTAACCTG........................................... 32428_4_0_0_0_0_2 MATURE-5P 6 1.69 4 2.44 2 1.04 22
....GTCCCTGAGACCCTTTAACCT............................................ 36514_1_0_0_0_0_5 MATURE-5P 6 1.69 1 0.61 5 2.60 21
....GTCCCTGAGACCCTTTAAaCTGT.......................................... 36529_0_0_0_0_0_5 MATURE-5P 5 1.40 0 0.00 5 2.60 18A4
....GTCCCTGAGACCCTTcAACCT............................................ 43339_1_0_0_0_0_4 MATURE-5P 5 1.40 1 0.61 4 2.08 15C5
...GGTCCCTGAGACCCTTTAACCcGT.......................................... 6295_4_0_0_0_0_1 MATURE-5P 5 1.40 4 2.44 1 0.52 21C2
...GGTCCCTGAGACCCTTTAACCTGa.......................................... 27775_4_0_0_0_0_0 MATURE-5P 4 1.12 4 2.44 0 0.00 23
.....TCCCTGAGACCCTTTAACCTGTGAa....................................... 35220_3_0_0_0_0_1 MATURE-5P 4 1.12 3 1.83 1 0.52 24
....GTCCCTGAGACCCTTTAACCaGTGA........................................ 21124_1_0_0_0_0_2 MATURE-5P 3 0.84 1 0.61 2 1.04 20A4
....GTCCCTGAGACCCTTTAACgTGa.......................................... 34167_3_0_0_0_0_0 MATURE-5P 3 0.84 3 1.83 0 0.00 19G2
....GTCCCTGAGACCCTTTAACCTGTG......................................... 11742_1_0_0_0_0_2 MATURE-5P 3 0.84 1 0.61 2 1.04 24
....GTCCCTGAGACCCTTTAAgCTGT.......................................... 28509_2_0_0_0_0_1 MATURE-5P 3 0.84 2 1.22 1 0.52 18G4
...GGTCCCTGAGACCCTTTAcCCTGT.......................................... 21944_2_0_0_0_0_1 MATURE-5P 3 0.84 2 1.22 1 0.52 18C5
....GTCCCTGAGACCCTTTAACCcGTGA........................................ 27879_1_0_0_0_0_2 MATURE-5P 3 0.84 1 0.61 2 1.04 20C4
....GTCCCTGAGACCCTTTAAtCTGT.......................................... 39592_1_0_0_0_0_1 MATURE-5P 2 0.56 1 0.61 1 0.52 18T4
....GTCCCTGAGACCCTTTAACCTaTGt........................................ 27473_2_0_0_0_0_0 MATURE-5P 2 0.56 2 1.22 0 0.00 21A2
....GTCCCTGAGACCCTTTAACCaGTGt........................................ 17098_2_0_0_0_0_0 MATURE-5P 2 0.56 2 1.22 0 0.00 20A3
....GTCCCTGAGACCCTTTAACCcGT.......................................... 13127_1_0_0_0_0_1 MATURE-5P 2 0.56 1 0.61 1 0.52 20C2
....GTCCCTGAGACCCTTTAACaTGT.......................................... 8364_0_0_0_0_0_2 MATURE-5P 2 0.56 0 0.00 2 1.04 19A3
...GGTCCCTGAGACCCTTTAACgTGa.......................................... 28980_1_0_0_0_0_1 MATURE-5P 2 0.56 1 0.61 1 0.52 20G2
....GTCCCTGAGACCCTTTAACCTGcGA........................................ 28838_1_0_0_0_0_1 MATURE-5P 2 0.56 1 0.61 1 0.52 22C2
....GTCCCTGAGACCCTTTAACCTaTG......................................... 40007_0_0_0_0_0_2 MATURE-5P 2 0.56 0 0.00 2 1.04 21A2
....GTCCCTGAGACCCTTTAACCTGTGc........................................ 11553_0_0_0_0_0_2 MATURE-5P 2 0.56 0 0.00 2 1.04 24
....GTCCCTGAGACCCTTTAACgTGTGA........................................ 41925_1_0_0_0_0_1 MATURE-5P 2 0.56 1 0.61 1 0.52 19G5
....GTCCCTGAGACCCTTTcACCT............................................ 30810_1_0_0_0_0_1 MATURE-5P 2 0.56 1 0.61 1 0.52 16C4
....GTCCCTGAGACCCTTTAACtTGT.......................................... 26127_1_0_0_0_0_1 MATURE-5P 2 0.56 1 0.61 1 0.52 19T3
....GTCCCTGAGACCCTTTAACCTGaGA........................................ 28632_2_0_0_0_0_0 MATURE-5P 2 0.56 2 1.22 0 0.00 22A2
....GTCCCTGAGACCCTTTAAaCTGTG......................................... 32304_1_0_0_0_0_1 MATURE-5P 2 0.56 1 0.61 1 0.52 18A5
....GTCCCTGAGACCCTTTAACCTcTGt........................................ 27401_0_0_0_0_0_2 MATURE-5P 2 0.56 0 0.00 2 1.04 21C2
....GTCCCTGAGACCCTTTAAgCTGTa......................................... 22869_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 18G4
....GTCCCTGAGACCCTTTAACaTGa.......................................... 32611_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 19A2
...GGTCCCTGAGACCCTTTAACCaGT.......................................... 31510_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 21A2
....GTCCCTGAGACCCTTTAACCTc........................................... 18015_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 21
.....TCCCTGAGACCCTTTAACCaGTGAt....................................... 20670_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 19A4
....GTCCCTGAGACCCTTTAACaTGTGA........................................ 24752_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 19A5
...GGTCCCTGAGACCCTTTAACCTGTa......................................... 38565_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 24
.....TCCCTGAGACCCTTTAACCTaTGAt....................................... 18527_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 20A3
....GTCCCTGAGACCCTTTAACCTGgGA........................................ 39719_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 22G2
......CCCTGAGACCCTTTAACCTGTaAGa...................................... 29683_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 21A2
....GTCCCTGAGACCCTTTAACCaGT.......................................... 32665_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 20A2
..GGGTCCCTGAGACCCTTTAtCCTGg.......................................... 27913_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 19T4
....GTCCCTGAGACCCTTTAACCTaTGg........................................ 26760_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 21A2
....GTCCCTGAGACCCTTTAACaTGTa......................................... 37387_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 19A3
....GTCCCTGAGACCCTTTAACCcGTa......................................... 38975_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 20C2
...GGTCCCTGAGACCCTTTAAaCTGT.......................................... 36370_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 19A4
....GTCCgTGAGACCCTTTAACCTGTGA........................................ 7732_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 4G20
...GGTCCCTGAGACCCTTTAACCgGT.......................................... 36725_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 21G2
....GTCCCTGAGACCCTTTAACtTGTGA........................................ 38228_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 19T5
.....TCCCTGAGACCCTTTAACCTGTGA........................................ 6693_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 24
..GGGTCCCTGAGACCCTTTAACCTGa.......................................... 19118_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 24
....GTCCCTGAGACCCTTTAACCTGTc......................................... 43482_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 23
...GGTCCCTGAGACCCTTTAACtTGTG......................................... 38031_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 20T4
....GTCCCTGAGACCCTTTtACCTG........................................... 30733_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 16T5
.......CCTGAGACCCTTTAACaTGTGA........................................ 21206_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 16A5
........CTGAGACCCTTTAACCTGT.......................................... 22751_1_0_0_0_0_0 MATURE-5P 1 0.28 1 0.61 0 0.00 19
....GTCCCTGAGACCCTTgAACCT............................................ 16698_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 15G5
..GGGTCCCTGAGACCCTTTAgCCTGT.......................................... 36625_0_0_0_0_0_1 MATURE-5P 1 0.28 0 0.00 1 0.52 19G5
---------- ---------- ----------
356 164 192
(46.07) (53.93)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE-5P 164 192 356 100.00%
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164 192 356
[END]