[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************************************************************
ID : mmu-mir-1198
DESCRIPTION : mmu-mir-1198 MI0006306 Mus musculus miR-1198 stem-loop
CHROMOSOME : X
SPAN : 7384227 - 7384347
LENGTH : 121
SEQUENCE : TTTTTTTTCTTTTGTTTATTTTGTTTGTGACAGTTGTCTGTTATGTGTTCCTGGCTGGCTTGGTACTCATGTGTAGCCCAAGCTAGCCTCTAACTCATGGCAGTCATCCTGTCTCAGTCTC
OVERHANG THRESHOLD : 40%
**********************************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-1198
ACCID : MI0006306
PARENT : mmu-mir-1198
CHROMOSOME : X
START : 7384227
STOP : 7384347
OFFSET : 42..63
SEQUENCE : TATGTGTTCCTGGCTGGCTTGG
STRAND : +
******************************
*** MATURE ***
_________________________________________________________________________________________________________________________
TTTTTTTTCTTTTGTTTATTTTGTTTGTGACAGTTGTCTGTTATGTGTTCCTGGCTGGCTTGGTACTCATGTGTAGCCCAAGCTAGCCTCTAACTCATGGCAGTCATCCTGTCTCAGTCTC REF X 7384227 - 7384347
TATGTGTTCCTGGCTGGCTTGG MATURE X 7384269 - 7384410 mmu-miR-1198 +
_________________________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.........................................TATGTGTTCCTGGCTGGCTTGa........................................................... 27373_2_0_0_0_0_3 MATURE 5 12.82 2 11.76 3 13.64 21
.........................................TATGTGTTCCTGGCTGGCTTGt........................................................... 21062_3_0_0_0_0_2 MATURE 5 12.82 3 17.65 2 9.09 21
.........................................TATGTGTTCCTGGCTGGCTTGGTAt........................................................ 34050_1_0_0_0_0_3 MATURE 4 10.26 1 5.88 3 13.64 24
.........................................TATGTGTTCCTGGCTGaCTTGt........................................................... 36423_3_0_0_0_0_0 MATURE 3 7.69 3 17.65 0 0.00 16A4
.........................................TATGTGTTCCTGGCTGaCTTGG........................................................... 43214_1_0_0_0_0_2 MATURE 3 7.69 1 5.88 2 9.09 16A5
.........................................TATGTGTTCCTGGCTGGCTTGGT.......................................................... 1651_1_0_0_0_0_1 MATURE 2 5.13 1 5.88 1 4.55 23
.........................................TATGTGTTCCTGGCTGGCTaGG........................................................... 6718_0_0_0_0_0_1 MATURE 1 2.56 0 0.00 1 4.55 19A2
.........................................TATGTGTTCCTGGCTGGCTTGc........................................................... 15190_0_0_0_0_0_1 MATURE 1 2.56 0 0.00 1 4.55 21
..........................................ATGTGTTCCTGGCTGGaTTGG........................................................... 22180_0_0_0_0_0_1 MATURE 1 2.56 0 0.00 1 4.55 16A4
.........................................TATGTGTTCCTGGCTGGCTTGGTAa........................................................ 5811_1_0_0_0_0_0 MATURE 1 2.56 1 5.88 0 0.00 24
.........................................TATGTGTTCCTGGCTGGCTa............................................................. 13095_0_0_0_0_0_1 MATURE 1 2.56 0 0.00 1 4.55 19
.........................................TATGTGTTCCTGGCTGGCTTt............................................................ 38025_1_0_0_0_0_0 MATURE 1 2.56 1 5.88 0 0.00 20
..........................................ATGTGTTCCTGGCTGGCTTGGTAt........................................................ 4021_0_0_0_0_0_1 MATURE 1 2.56 0 0.00 1 4.55 23
.........................................TATGTGTTCCTGGCTGGCTaGGTAt........................................................ 3326_0_0_0_0_0_1 MATURE 1 2.56 0 0.00 1 4.55 19A4
.........................................TATGTGTTCCTGGCTGGCTgGGTAa........................................................ 37425_1_0_0_0_0_0 MATURE 1 2.56 1 5.88 0 0.00 19G4
.........................................TATGTGTTCCTGGCTGGCTgGGT.......................................................... 12231_1_0_0_0_0_0 MATURE 1 2.56 1 5.88 0 0.00 19G3
.........................................TATGTGTTCCTGGCTaGCTTG............................................................ 24371_0_0_0_0_0_1 MATURE 1 2.56 0 0.00 1 4.55 15A5
.........................................TATGTGTTCCTGGCTGGCTcGGTAt........................................................ 14380_0_0_0_0_0_1 MATURE 1 2.56 0 0.00 1 4.55 19C4
.........................................TATGTGTTCCTGGCTGGCTTGGTt......................................................... 38600_0_0_0_0_0_1 MATURE 1 2.56 0 0.00 1 4.55 23
.........................................TATGTGTTCCTGGCTGGCTTGaTAt........................................................ 29777_0_0_0_0_0_1 MATURE 1 2.56 0 0.00 1 4.55 21A2
.........................................TATGTGTTCCTGGCTGGCTTGaTAg........................................................ 10772_1_0_0_0_0_0 MATURE 1 2.56 1 5.88 0 0.00 21A2
.........................................TATGTGTTCCTGGCTGGCTTaGT.......................................................... 1086_1_0_0_0_0_0 MATURE 1 2.56 1 5.88 0 0.00 20A2
..........................................ATGTGTTCCTGGCTGGCTTGGTAa........................................................ 22746_0_0_0_0_0_1 MATURE 1 2.56 0 0.00 1 4.55 23
---------- ---------- ----------
39 17 22
(43.59) (56.41)
*** OTHER ***
_________________________________________________________________________________________________________________________
TTTTTTTTCTTTTGTTTATTTTGTTTGTGACAGTTGTCTGTTATGTGTTCCTGGCTGGCTTGGTACTCATGTGTAGCCCAAGCTAGCCTCTAACTCATGGCAGTCATCCTGTCTCAGTCTC REF X 7384227 - 7384347
TATGTGTTCCTGGCTGGCTTGG MATURE X 7384269 - 7384410 mmu-miR-1198 +
_________________________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............................................................................AAGCTAGCCTCTAACTCATcGCA.................... 6273_0_0_0_0_0_1 OTHER 1 50.00 0 0 1 50.00 19C3
...............................................................................AAGCTAGCCTCTAACTCATGG...................... 17046_0_0_0_0_0_1 OTHER 1 50.00 0 0 1 50.00 21
---------- ---------- ----------
2 0 2
(0.00) (100.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 17 22 39 95.12%
OTHER 0 2 2 4.88%
---------- ---------- ----------
17 24 41
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